1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AGCAAAGGAGGAAGCTCTGAGCAGAAAAGAAATATTAGATAAAGTTGAGAGATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGAgtatggttgttctgactactagtgaaacgtgttatcccacctatattctgaagctatgaagtactgagcatgaaattccttttgcag
species | Oryza sativa |
transcript | LOC_Os02g48830.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGA GATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGTEST: gi|58671701|gb|CK060387.1|CK060387
genomic: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGAgtatggttgt ... ccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGT
EST: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGA GATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGT
genomic: GATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGAgtatggttgt ... ccttttgcagGATGACAACAGGTATAACTCAGGCCGAGGTGCTCACCTGAATCTCAAACGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCAAAGGAGGAAGCTCTGAGCAGAAAAGAAATATTAGATAAAGTTGAGAGATGGATATCCTCATGCGAGGAGGAAAGCTGGCTTGAAGACTATAGCAGAgtatggttgttctgactactagtgaaacgtgttatcccacctatattctgaagctatgaagtactgagcatgaaattccttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA