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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCCTTAGATTGCAGCAGGACAAAAGAGCAGTGCTGCTGTATTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaattatgctgtactgagaagccatgcttacattcatagaatgccaatcttactcttatgggaaattagtccatcaatattctgcccttcagaagt...

Basic information

species Oryza sativa
transcript LOC_Os02g48340.2
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29645024|gb|CB650031.1|CB650031
EST:     TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: gi|58674908|gb|CK063595.1|CK063595
EST:     TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: gi|58676595|gb|CK065282.1|CK065282
EST:     TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: gi|38479722|gb|CF963811.1|CF963811
EST:     TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: gi|29677295|gb|CB673570.1|CB673570
EST:     TTTGGAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: gi|218479580|gb|FG967759.1|FG967759
EST:     TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGTCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATCAGATGTACCTGGAATCATGATGTTGCCCCG
EST: gi|33676574|gb|CF304813.1|CF304813
EST:     TTTGTAGTACTGGTTCCTACCTGGCAAGTAATCCCCCTTGCATTCATAAG                         GTTGCCCTTATCATGGTCATC
genomic: TTTGTAGTACTGGTTCTTACCTGGCAAGTAATCCCCCTTGCATTCATAAGgtaccaatta ... atttctgcagGTTGCCCTTATCATGGTCATC