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AACTAGGTTAGAGGCGCTTGATAAGAAGGATGCTGAAAGGAGGAGAACTGCTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctgttctcttctaccttcagtgttaatagcataaaacatgttactgccattcacatgacccctcttgtttcttgatatatctgaaatctttga...
species | Oryza sativa |
transcript | LOC_Os02g48110.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAAEST: gi|27576359|gb|CA999053.1|CA999053
genomic: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAAEST: gi|27554575|gb|CA998475.1|CA998475
genomic: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAAEST: gi|29673173|gb|CB669448.1|CB669448
genomic: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
EST: TGAACTGAAAAATAACCTCGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAAEST: gi|33793770|gb|CF322769.1|CF322769
genomic: TGAACTGAAAAATAACCT-GGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAAEST: gi|58604720|gb|CK015248.1|CK015248
genomic: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAATACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAAEST: gi|58595438|gb|CK005966.1|CK005966
genomic: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
EST: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAG CTGGAAGAGAATACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
genomic: CTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctg ... cacatcacagCTGGAAGAGAACACAGAAATTTTGACCGTCTCAACTGAACAGGAGAGGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTAGGTTAGAGGCGCTTGATAAGAAGGATGCTGAAAGGAGGAGAACTGCTGAACTGAAAAATAACCTGGAGTCTTACATATACTCTATGAAGGAGAAGgtaccttctgttctcttctaccttcagtgttaatagcataaaacatgttactgccattcacatgacccctcttgtttcttgatatatctgaaatctttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acccctc