1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAGgtttcattcaaactcacccatcagtgtgaactctgaattcatgttatagtaaaattgttgatttaaagaagcttctccttttttttttcttttccag
species | Oryza sativa |
transcript | LOC_Os02g47410.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAG AGTGGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCCEST: gi|29638402|gb|CB643411.1|CB643411
genomic: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAGgtttcattca ... tcttttccagAGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCC
EST: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAG AGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCCEST: gi|58673354|gb|CK062040.1|CK062040
genomic: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAGgtttcattca ... tcttttccagAGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCC
EST: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCCTTTACTCGTATATTCAG AGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCCEST: gi|58610888|gb|CK038600.1|CK038600
genomic: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAGgtttcattca ... tcttttccagAGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCC
EST: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAG AGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCC
genomic: ATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAGgtttcattca ... tcttttccagAGTCGGTATTACAGATCTCCGGAAGTACTTCTTGGTTACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTAAAAACAGCAGCTGGGGTTAAAGTAATTGATTTTGGATCAGCATGCTTGGAGGGTAAAACCATTTACTCGTATATTCAGgtttcattcaaactcacccatcagtgtgaactctgaattcatgttatagtaaaattgttgatttaaagaagcttctccttttttttttcttttccag
- - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG