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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGATTCTGAAGATTTGCAATGTTATCGGTAGCCCAGATGAACAATCATGGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattcatcttccccttttccctttgcctatatatgttttcttttgggggtaagctctttgttgtgattatacttgtttctgaatgtgtcatgaat...

Basic information

species Oryza sativa
transcript LOC_Os02g47220.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47220.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 13
TGAGATTCTGAAGATTTGCAATGTTATCGGTAGCCCAGATGAACAATCATGGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattcatcttccccttttccctttgcctatatatgttttcttttgggggtaagctctttgttgtgattatacttgtttctgaatgtgtcatgaat----
||||||||  ||||| |||||||| |||||||| |||||||| ||||| ||||| ||||||||||||||||||||  | ||||||| ||||||||| ||||||| ||||||        ||||| |||||  ||   |  |    |||||     ||||  |  |||    |   | |  |     | ||| |  || ||    
TGAGATTCACAAGATATGCAATGTCATCGGTAGTCCAGATGAGCAATCTTGGCCTCAAGGATTGTCTCTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattcactagtttattttctctttgg-tac-cacctcaagttttgaaaagaagca-tgagttaacctagaattaatcagccagtgtatt-tggatataa

upper sequence: LOC_Os02g47220.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 12
TGAGATTCTGAAGATTTGCAATGTTATCGGTAGCCCAGATGAACAATCATGGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattcatcttccccttttccctttg---cctatatatgttttcttttgggggtaagctctttg--ttgtgattatacttgtttctgaatgtgtcatgaat
||||||||  ||||| |||||||| |||||||| |||||||| ||||| ||||| ||||||||||| ||||||||  | ||||||| ||||||||| ||||||| |||||| |    ||||||| |||||   ||     | ||||| ||||      |      ||    |   ||||| |  | | ||  || ||        
TGAGATTCACAAGATATGCAATGTCATCGGTAGTCCAGATGAGCAATCTTGGCCTCAAGGATTGTCACTTGCAGAAGCAATGAAGTATCAGTTCCCACAGgtcaatattcaccagttccttttctctttggtaccgcctcaagtttttttttaaaaaaacatgtattaacctagaattatgca-gctactatatttggatc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58595654|gb|CK006182.1|CK006182
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|163923153|gb|EG709322.1|EG709322
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|58683626|gb|CK072313.1|CK072313
EST:     GGCCACGAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|88256807|gb|CI354588.1|CI354588
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|88664333|gb|CI687436.1|CI687436
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|58675617|gb|CK064304.1|CK064304
EST:     GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GGCCACAAGGATTGTCTCTTGCAGAGACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
EST: gi|163918501|gb|EG711431.1|EG711431
EST:     GACCATGAAGTTTCAGTTCCCTCAG                         GTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA
genomic: GACCATGAAGTTTCAGTTCCCTCAGgtcagtattc ... atcaatgcagGTCAGTGGCAATCAACTGGCAGAGGTAATGACATCAGTCAGTAGTGAGGCA