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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttcctcttttgactcttttacccattgctgtctgcctttatagtttcttgttggacatgttgatagatgattttcttggatag

Basic information

species Oryza sativa
transcript LOC_Os02g43930.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g43930.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G118731_T01 (Zea mays), 5'ss of exon 7
TCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttcctcttttgactcttttacccattgctgtctgcctttatagtttcttgttggacatgttgatagatgattttcttggatag------------------------
|| || ||||| ||  |||||||||||||||||||||| || ||||||||||| || || || || ||||||||| | || ||||||||||| ||||| |||| | | |  | ||||  |||||||     ||||| | | |||||    |    | |   |     | | |  | | ||        |                         
TCTCTCACCGAAGCATTGTGTGGCTTCCAGTTTGTTCTTACTCATCTTGATGGGCGACAGCTTCTGATCAAATCTGACCCCGGGGAGGTTATTAAACCAGgtaggatatattttttt--ctctttttttgcttgctatatccctttgagctcaactatcctatccaataaaatctcagttctgcatgcactgatattatgttttgttggaatag

upper sequence: LOC_Os02g43930.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA03G27030.1 (Glycine max), 5'ss of exon 7
TCCCTGACCGAGGCTCTGTGTGGCTTCCAGTTTGTTCTAACCCATCTTGATGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgta-tgctttcctcttttgactcttt---taccc---attgctgtctgcctttatagtttcttgttggacatgttgatagatgattttcttggatag
  | | |||||||| || |||||||||||||||| | | |  |||||||||||| |||||||  | |||||||| || || ||||| || || ||||| |||| | |||     | |||    | |   |  |    ||| |  ||  ||  | || |   || |  ||  | |  ||   | |||||  |    ||
AGCTTAACCGAGGCACTCTGTGGCTTCCAGTTTGCTGTCAAACATCTTGATGGTAGGCAACTATTGATCAAATCAAACCCTGGGGAAGTCATCAAACCAGgtaatacttaagaatattgggagtatgcatgactggaatttcattcgaccactctattcaattttatgatttatgaattt-taattttgctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665502|gb|CB661777.1|CB661777
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|86428175|gb|CI074856.1|CI074856
EST:     GGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: GGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|218503180|gb|FG945924.1|FG945924
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|396941261|gb|HO188470.1|HO188470
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|218484817|gb|FG946762.1|FG946762
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|58684540|gb|CK073227.1|CK073227
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|88216845|gb|CI216447.1|CI216447
EST:     AGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: AGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|33795096|gb|CF323421.1|CF323421
EST:     GGTCGGCAACTCCTAATCAAATCTAATCCAGGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: GGTCGGCAACTCCTAATCAAATCTAATCCAGGGG-AGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|29686473|gb|CB682748.1|CB682748
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|29627564|gb|CB632575.1|CB632575
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|88677265|gb|CI729923.1|CI729923
EST:     GGTCGGCAACTCCTAATCAAATCTAATCCAGGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: GGTCGGCAACTCCTAATCAAATCTAATCCA-GGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|58679665|gb|CK068352.1|CK068352
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|33658616|gb|CF281229.1|CF281229
EST:     TCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|29665503|gb|CB661778.1|CB661778
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|58598357|gb|CK008885.1|CK008885
EST:     TTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|218482248|gb|FG968976.1|FG968976
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|3767212|gb|AU031322.1|AU031322
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|33658615|gb|CF281228.1|CF281228
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|87018980|gb|CI256865.1|CI256865
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|33808760|gb|CF330265.1|CF330265
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|29686472|gb|CB682747.1|CB682747
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|116875639|gb|EC366147.1|EC366147
EST:     TGGTCGGCAACTCCTAATCAAATTTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|58602870|gb|CK013398.1|CK013398
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|14571405|gb|BI118773.1|BI118773
EST:     GGTCGGGCAACTCCTAATCAGATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: GGTC-GGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|33796344|gb|CF324039.1|CF324039
EST:     GGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: GGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|218499207|gb|FG956931.1|FG956931
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCTATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|29683464|gb|CB679739.1|CB679739
EST:     TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TGGTCGGCAACTCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
EST: gi|89165412|gb|CI102502.1|CI102502
EST:     TCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTG                         GTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT
genomic: TCCTAATCAAATCTAATCCAGGGGAGGTTATAAAACCTGgtatgctttc ... tcttggatagGTCAACACAAGGCCATCAATGATGAAGGCATGCCCCAGCATGGCCGCCCTT