1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTGGTGCTTACTGAACCGGTTTCAACATTCAGCGATGGTGATCAGCCTTTATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcag
species | Oryza sativa |
transcript | LOC_Os02g43500.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88587786|gb|CI705560.1|CI705560
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29661124|gb|CB657399.1|CB657399
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29619334|gb|CB624346.1|CB624346
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|58608739|gb|CK036772.1|CK036772
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|86859786|gb|CI345434.1|CI345434
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88661720|gb|CI458736.1|CI458736
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAAAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|40491369|gb|BX901479.1|BX901479
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88468873|gb|CI696875.1|CI696875
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGEST: gi|86882326|gb|CI325766.1|CI325766
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGG
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88546506|gb|CI476149.1|CI476149
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATTTACGCCAAGAACAGAGAGGTGCCCAAATTNTTCAGGCGCAGGAAAG GTGATGTNTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29684684|gb|CB680959.1|CB680959
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|218480294|gb|FG954453.1|FG954453
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29643098|gb|CB648105.1|CB648105
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88418870|gb|CI506631.1|CI506631
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATGTACGCCAAGGACAGAGAGGTGCCCCAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGGGAGCACEST: gi|88372136|gb|CI641771.1|CI641771
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|66914797|gb|CX101645.1|CX101645
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCGGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29660129|gb|CB656404.1|CB656404
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29661191|gb|CB657466.1|CB657466
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88374277|gb|CI513364.1|CI513364
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: AGAACAGAGAGGTGCGCAAATTTTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCGCGGGGATGGCAATGGCGAGTGAGCACEST: gi|88448624|gb|CI694015.1|CI694015
genomic: AGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88993265|gb|CI257693.1|CI257693
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|95101156|gb|CI692891.1|CI692891
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29660498|gb|CB656773.1|CB656773
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTTTTTGCACGGGGATGGCAATGGCAAGTGAGCCCEST: gi|88385098|gb|CI561754.1|CI561754
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: NATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88852606|gb|CI008799.1|CI008799
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29660247|gb|CB656522.1|CB656522
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29667086|gb|CB663361.1|CB663361
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29687907|gb|CB684182.1|CB684182
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTTTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|88450482|gb|CI546982.1|CI546982
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|58030945|gb|CX728488.1|CX728488
genomic: TACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCACEST: gi|29684442|gb|CB680717.1|CB680717
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
EST: TATTTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAG GTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
genomic: TATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagc ... atgtttgcagGTGATGTGTCCAACATGTCTCTGCACGGGGATGGCAATGGCAAGTGAGCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGGTGCTTACTGAACCGGTTTCAACATTCAGCGATGGTGATCAGCCTTTATCTACGCCAAGAACAGAGAGGTGCCCAAATTGTTCAGGCGCAGGAAAGgtaaatcagccttttgcacaatgattcccaacaacaatgtcattcaaataatatacgcatatttccacttgctattttggattgaaaaacagccctgatttcaaacaaaatgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG