1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGATGGTCTGGCACCAAAGACAGCTGACAGACAGTCTTCCATAGAACAGATTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaataacaaatggtatctcatttggaatggcccgctttaccactgcactggttatgactaatttggacatgttatgtgggtag
species | Oryza sativa |
transcript | LOC_Os02g40830.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCAEST: gi|163921201|gb|EG714126.1|EG714126
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCA
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAATCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCAEST: gi|163929534|gb|EG713477.1|EG713477
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCA
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAATCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCAEST: gi|29662328|gb|CB658603.1|CB658603
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCA
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCAEST: gi|29662110|gb|CB658385.1|CB658385
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCA
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGEST: gi|13420568|gb|AU174658.1|AU174658
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAG
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCAEST: gi|33794775|gb|CF323267.1|CF323267
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAACAAGCTGGTCGCTGCTGATGCA
EST: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAAACA-GCTGGTCGCTGCTGATGCEST: gi|27577186|gb|CA999880.1|CA999880
genomic: TTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAA-CAAGCTGGTCGCTGCTGATGC
EST: TAAGAAGCTCTATGAACTGTTCTGNCAA-TCTGATTGCACACTGCTCGAG ATTAATCCTCTTGCTGAGACAGCTGACAAACA-GCTGGTCGCTGCTGATGC
genomic: TAAGAAGCTCTATGAACTGTTCTG-CAAGTCTGATTGCACACTGCTCGAGgtaatcaata ... atgtgggtagATTAATCCTCTTGCTGAGACAGCTGACAA-CAAGCTGGTCGCTGCTGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGTCTGGCACCAAAGACAGCTGACAGACAGTCTTCCATAGAACAGATTAAGAAGCTCTATGAACTGTTCTGCAAGTCTGATTGCACACTGCTCGAGgtaatcaataacaaatggtatctcatttggaatggcccgctttaccactgcactggttatgactaatttggacatgttatgtgggtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC