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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGCTTCGCTTTGCAAACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAGgtaatatgcttttctatgtagtcctttgtatttttatttgtcaactgtagttacatctatgacatcctctgttattggtataaagttgaatggattagttttggaaattctggaaagttttatcattatcatggtgcgaacaacatgtgcttgaacataataaatatatgctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g38840.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G031107_T01 (Zea mays), 5'ss of exon 7
CTTGTGCTTCGCTTTGCAAACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAGgtaatatgcttttctatgtagtc------ctttgtatttttatttgtcaactgtagttacat-ctatga----------catcctctgtta-ttggtataaag--ttgaatggattagttttggaaattctggaaagttttatcattatcatggtgcgaacaacatgtgcttgaacataataaatatatgctgcag
||||||||||| ||||||||||| || ||  | ||||| ||||| ||||||||||| ||||| |||||||||| || |||| ||| || ||        ||| | | ||| ||| | ||   | |||   |  ||| |          |||| | ||| | || || | |||  || |||  | | | | |  |||  ||| |   ||||    | || || ||||  |  | |||| |||| |  |||| |||  || ||||||
CTTGTGCTTCGTTTTGCAAACCGCTTATTTTTGCCTCTCTGGAACCGTGATAACATAGCTAACGTACAGgtaagatcctttcctaggtggttacagtattttttttatttctttataaatcatggttggctgttataagttgataacacatcttttgtcagtttgtctgaagaattaaataaaattgatgtcaaaaagctgtat--tttttcagtaattattgtgcctaacatatgttcttgcatgtaatgaatgaattctgcag

upper sequence: LOC_Os02g38840.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA19G22690.1 (Glycine max), 5'ss of exon 7
CTTGTGCTTCGCTTTGCAAACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAGgtaatatgcttttctatgtagtcctttgtatttttatttgtcaactgtagttacatctat-gacatcctctgttattggtata-aagttgaatggattagttttggaaattctggaaagttttatcattatcatggtgcgaacaacatgtgcttgaacataataaatatatgctgcag
 | || ||||| ||||||||||| || ||| | ||||| ||||| ||||| |||||||||||||| ||||| | |   | | ||    |      |     |  | |  ||||     |    ||   | | | |      ||  |  |  | || |||  |    ||  |                                                                            
TTAGTACTTCGTTTTGCAAACCGATTATTCATGCCTCTATGGAACCGTGACAACATTGCTAATGTGCAGgtgagaaagtgtgctgccaaagttactac---tgaagtcatcaaacaaggccttattagttggcttgacaaattcatatttcataatttgcctcatctaactg---------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29616736|gb|CB621748.1|CB621748
EST:     ACCGTTTGTTCCTACCTCTCTGGAATCGTGATAACATTGCTAATGTACAG                         ATTGTATTCAGAGAGGACTTTGGGACTGAAGGACGTGGAGGGTACTTTNGA
genomic: ACCGTTTGTTCCTACCTCTTTGGAATCGTGATAACATTGCTAATGTACAGgtaatatgct ... tatgctgcagATTGTATTCAGAGAGGACTTTGGGACTGAAGGACGTGGAGGGTACTTT-GA