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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttttttaccaccaattgattgctgtgtatgtacaatacatatttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg...

Basic information

species Oryza sativa
transcript LOC_Os02g37870.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G168176_T01 (Zea mays), 5'ss of exon 7
GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttttttaccaccaattgat-tgctgtgtatgtacaatacatatttctgagcatctt---aggtgagcacctgaaaatgttaaagcaatctaggt--ttg---
|||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| ||||| |||| |||  | || ||||||||||| |         |  | |  ||| | || |||   |||||  | ||||  | |||  || ||   |||||        | | | | || |||| | || |  ||    
GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtgt--------gataatccgttgttctgttgtcc-tgtactgttcataagtttgaatatatttgtaggtgttagtgctatactctaaaggcaacccagataattactt

upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G168176_T02 (Zea mays), 5'ss of exon 7
GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttttttaccaccaattgat-tgctgtgtatgtacaatacatatttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg
|||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| ||||| |||| |||  | || ||||||||||| |         |  | |  ||| | || |||   |||||  | ||||  | |||  || || | |  |     |                         
GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGgtatgagaacccatactacatttcccccaatcaggtgt--------gataatccgttgttctgttgtcc-tgtactgttcataagtttgaatatatttg-taggtgttag-------------------------

upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G160458_T01 (Zea mays), 5'ss of exon 7
GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatccc--ttttttaccaccaattgattgctgtgtatgtacaatacatatttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg
|||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||| ||| ||||| |||| |||  | || |||||||||||||     ||   |      || |  |     ||  |||     | |  ||||    ||  |||  |      |   ||  | ||    |  |   |||  
GTTGGCCCCAGGTTCTGTTTGAATCCAATCAAAATATTTGGTGGTAGTTTTGGTGGTCCTACATGGTATGAGAACCCATACTACATTTCCCCCAATCAGgtatgttaattcactgttctgaacttctgatgttgagtgttgttcataagtttcaacccaggttaattacttttcatcaagggctagttgataccgtgtt--

upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA02G12700.2 (Glycine max), 5'ss of exon 9
GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttttttaccaccaattgattgctgtgtatgtacaatacatatttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg-----
||||| ||  | ||||| ||||||||||| ||||||||||| || ||||| || || || || || || |||||||||||||||||||| || |||||||||          |  ||||||  |||      | | |||  || |  || |  ||  |  ||  |||  |    || ||  | |     | | ||||       
GTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGAAGTTTTGGAGGGCCAACTTTATATGAGAATCCATTCTATGTGTCCCCAAATCAGgta----------aagaccaataaatt-taccatctatact-tataatttcccaagttttctac-tgaaaataacaatatcatcattggttgttggttcttacag

upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA08G28320.1 (Glycine max), 5'ss of exon 8
GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcc-cttttttaccaccaattgattgctgtgtatgtacaatacatatttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg
||||| ||  | ||||| ||||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||  |||||||||| || |||||||||    |   | ||    | ||  ||   | |  || | | |  | |    ||||  || | |    | |         || | |  |  | |||     
GTTGGTCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCGCTCTATGTGTCACCAAATCAGgtactggccaatatattttccatctatatttata-atttcccaagctttccactgacaatataactctatcgttattggttgctgat-ccttatag-----

upper sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 7
GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttttttaccaccaattgattgctgtgtatgtacaatacat--atttctgagcatcttaggtgagcacctgaaaatgttaaagcaatctaggtttg
|| |||||  | ||||| ||||||||||| ||||||||||| || ||||| || ||||| || || |||||||||||| |||||||||| || |||||||||        ||||||  |  |  |   | | ||| || |||      |  | |   | |  ||  |  | | |   |   |||   |     ||      
GTCGGCCCGCGATTCTGCTTGAACCCAATTAAAATATTTGGTGGCAGTTTTGGAGGCCCAACTTTATACGAGAATCCACTCTATGTGTCACCGAATCAGgtac-------ttaccaatatattttccatctatatttataatttcccaagctttccactttctaactatgtatcatcattggttgctggttcttatag---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88546109|gb|CI475718.1|CI475718
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGGCCGGCAAGTATGCCAAGAAGGT
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAA-GGCCGGCAAGTATGCCAAGAAGGT
EST: gi|88563872|gb|CI494589.1|CI494589
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88284980|gb|CI502317.1|CI502317
EST:     CGGTGGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: CGGT-GGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88536208|gb|CI465941.1|CI465941
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88850020|gb|CI091315.1|CI091315
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|55408537|gb|CV720913.1|CV720913
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86598853|gb|CI355470.1|CI355470
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88481541|gb|CI418812.1|CI418812
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|87013802|gb|CI269301.1|CI269301
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88288002|gb|CI512679.1|CI512679
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTGTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGANAAGCGGAAGAAGGCCGGCAAGTATNCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88468241|gb|CI512256.1|CI512256
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88903030|gb|CI088568.1|CI088568
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88563311|gb|CI494028.1|CI494028
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88270082|gb|CI381380.1|CI381380
EST:     TCGGTGGCCCTACATT-TACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATTCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88293608|gb|CI505525.1|CI505525
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88557224|gb|CI487615.1|CI487615
EST:     CGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: CGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88419043|gb|CI508996.1|CI508996
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88241455|gb|CI241304.1|CI241304
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86545913|gb|CI186119.1|CI186119
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88566714|gb|CI497431.1|CI497431
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGGT
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAA-GGT
EST: gi|89180088|gb|CI044367.1|CI044367
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88435426|gb|CI509097.1|CI509097
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86828209|gb|CI276815.1|CI276815
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88849106|gb|CI087628.1|CI087628
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88220331|gb|CI219891.1|CI219891
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88285753|gb|CI510013.1|CI510013
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88565137|gb|CI495854.1|CI495854
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88565030|gb|CI495747.1|CI495747
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88990125|gb|CI107566.1|CI107566
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88239196|gb|CI240358.1|CI240358
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|66915129|gb|CX101977.1|CX101977
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88420183|gb|CI501805.1|CI501805
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|25806580|gb|CA762541.1|CA762541
EST:     TTGGCGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88202662|gb|CI201017.1|CI201017
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86544749|gb|CI184955.1|CI184955
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86431994|gb|CI085605.1|CI085605
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88318881|gb|CI510676.1|CI510676
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88318789|gb|CI508385.1|CI508385
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88374136|gb|CI510954.1|CI510954
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTNTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86855222|gb|CI265148.1|CI265148
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88563953|gb|CI494670.1|CI494670
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88489482|gb|CI426754.1|CI426754
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|27577569|gb|CB000264.1|CB000264
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88434983|gb|CI504325.1|CI504325
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88550737|gb|CI480734.1|CI480734
EST:     TCGGGGGCCCTACATTGTACGAGAATCCATTGTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATNCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86412482|gb|CI017350.1|CI017350
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88566713|gb|CI497430.1|CI497430
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88288065|gb|CI512742.1|CI512742
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88287825|gb|CI510105.1|CI510105
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|87036060|gb|CI189507.1|CI189507
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86545215|gb|CI185421.1|CI185421
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88569309|gb|CI502229.1|CI502229
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88568831|gb|CI499548.1|CI499548
EST:     TCGNTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88981009|gb|CI021136.1|CI021136
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|88565167|gb|CI495884.1|CI495884
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
EST: gi|86545709|gb|CI185915.1|CI185915
EST:     TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAG                         ATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC
genomic: TCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 52 (downstream exon)
Score: 6

GTTGGCCCAAGGTTCTGTTTGAACCCAATCAAAATATTTGGCGGTAGTTTCGGTGGCCCTACATTGTACGAGAATCCATTCTATGTGTCTCCCAATCAGgtatcccttt ... tcttcgtcagATCCGTGCACTAGAGAAGCGGAAGAAGGCCGGCAAGTATGCCAAGAAGGTCAAGGCTAAGGTGAGGAGGAAGATGCACGAGATGGAGAACACTCTGGAGC




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