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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAATGTCGGTGCAATATTCAATAACATCTATGAGTTCACTGGTTTGATTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatcttacttatctctttctttgttttaaagttaaaaatgcagtatcttataaatttataattttgaagtgttgtatagctgatttttggcatat...

Basic information

species Oryza sativa
transcript LOC_Os02g35470.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35470.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G054109_T01 (Zea mays), 5'ss of exon 7
AAGAAATGTCGGTGCAATATTCAATAACATCTATGAGTTCACTGGTTTGATTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatcttacttatctctttctttgttttaaagttaaaaatgcagtatc-ttataaatttataattttgaagtgttgtatagctgatttttggcatat-------
|||||| || |||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||| |||||||| || ||||| || |||||| |  ||||  ||    || |      |  || |    || |  |  | | ||| |||| | ||       ||||| ||     |||| ||  ||  ||       
AAGAAACGTGGGTGCAATATTCAATAACATCTATGAGTTCACTGGTTTGATTGCCGATGATCAGTTCATTTCAGCTGAAAATCTTACAGACAATCAAAAGgttagtgtctt--ttgggactctgccaactacaatgccttaagtcaaaaaccattagaaatctgtat------agtgtcgtcagtttgatattctgctgatgtaacca

upper sequence: LOC_Os02g35470.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G113453_T01 (Zea mays), 5'ss of exon 7
AAGAAATGTCGGTGCAATATTCAATAACATCTATGAGTTCACTGGTTTGATTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatcttacttatctctttctttgttttaaagttaaaaa----tgcagtatcttataaatttataattttgaagtgttgtatagctgatttttggcatat
|||||| || ||||||||||||||||||||||| |||||||||||||||||||| || || |||||||||||||| ||||||||||| ||||||||||||||| |  || |    | ||||  |            |||||||    | || | | |||||   |  | | |||||  |  ||      |||    | |     
AAGAAACGTGGGTGCAATATTCAATAACATCTACGAGTTCACTGGTTTGATTGCCGATGATCAGTTCATTTCAGCTGAAAATCTCACAGACAACCAGAAGgttagtgtcctttgcaactctgccaactacaatgccttaaaaacctttacaattttttatagtgtcgtcagtttgatattctgctactgtgaccagtaga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667009|gb|CB663284.1|CB663284
EST:     TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: gi|58607528|gb|CK035561.1|CK035561
EST:     TCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTGAGAAAGCATATGAGGATTGGATGCATGTT
genomic: TCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: gi|29666753|gb|CB663028.1|CB663028
EST:     TGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: TGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: gi|84117303|gb|CD151070.1|CD151070
EST:     TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: gi|29668182|gb|CB664457.1|CB664457
EST:     TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: gi|87007707|gb|CI287551.1|CI287551
EST:     TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: TTGCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
EST: gi|3761547|gb|C98795.1|C98795
EST:     GCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAG                         ATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT
genomic: GCTGACGACCAGTTCATTTCAGCAGAAAATCTCACTGACAACCAGAAGgttggcatct ... tctattgcagATCTATGCAGATGGATTGGTTAAGAAAGCATATGAGGATTGGATGCATGTT