Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATACTCCCCTGCAGACCTACAGGTGTTACTCTGGATATTAAGAAGTCATCACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTgtaagatagtgcattgaacttttctggtttcctttatgtccatgatttacaatagatgcatttagtggattcactgaattgttgcatgtgtggcaagtaa...

Basic information

species Oryza sativa
transcript LOC_Os02g35160.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g35160.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G128189_T01 (Zea mays), 5'ss of exon 7
CATACTCCCCTGCAGACCTACAGGTGTTACTCTGGATATTAAGAAGTCATCACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTgtaagatag-tgcattgaacttttctggtttcctttatgtccatgatttacaatagatgcatttagtggattcactgaattgttgcatgtgtggcaagtaa
|||||| ||   ||||||| | ||||||||| | ||||| || |||||||||||||||||| | || |||||||| ||||||||||||||  ||||||||||||||  | |   ||     |   |  |||    ||| | |    |   | |    || | |   || | |   |   |   |  || | |   ||| | 
CATACTACCGAACAGACCTCCTGGTGTTACTATTGATATAAAAAAGTCATCACACAAAAAGTTGTCGAAGTGGTTACAATCAAAATCTTCATCTGGCCTTgtaagactgctatttttcgtatgcataatttatgatatattcgacttagtccagttctggactacatgtactagttttttgtcttaattttttctaagca-

upper sequence: LOC_Os02g35160.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G432525_T01 (Zea mays), 5'ss of exon 4
CATACTCCCCTGCAGACCTACAGGTGTTACTCTGGATATTAAGAAGTCATCACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTgtaagatag-tgcattgaacttttctggtttcctttatgtccatgatttacaatagatgcatttagtggattcactgaattgttgca-tgtgtggcaagtaa
|||||| ||   ||||||| | ||||||||| | ||||| || |||||||||||||||||| | || |||||||| ||||||||||||||  ||||||||||||||  | |   ||     |   |  |||    ||| | |    |   | |    || | |   || | |   |   ||||   | | | |   |||   
CATACTACCGAACAGACCTCCTGGTGTTACTATTGATATCAAAAAGTCATCACACAAAAAGTTGTCGAAGTGGTTACAATCAAAATCTTCATCTGGCCTTgtaagactgctattttttgtatgcataatttatgatatattcgacttagtccagttctggactacatgtactagtttttttgtcttaattttttctaagc--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|157650509|gb|EX450143.1|EX450143
EST:     CACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTT                         ATTTCATCAAAAGAAGACAAGCATAAAAAGGAAGTCATGTTGCTTCGTATC
genomic: CACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTgtaagatagt ... tttttcacagATTTCATCAAAAGAAGACAAGCATAAAAAGGAAGTCATGTTGCTTCGTATC
EST: gi|86499190|gb|CI141823.1|CI141823
EST:     CACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTT                         ATTTCATCAAAAGAAGACAAGCATAAAAAGGAAGTCATGTTGCTTCGTATC
genomic: CACACAAAAAGCTATCCAAGTGGTTGCAATCAAAATCTTCCGCTGGCCTTgtaagatagt ... tttttcacagATTTCATCAAAAGAAGACAAGCATAAAAAGGAAGTCATGTTGCTTCGTATC