1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctctttcacatgtaacctttttattttcatgccaatgtgttcttgcccttcttttattgtaagaaattatttctataccttttgaaatcattt...
species | Oryza sativa |
transcript | LOC_Os02g35039.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTACCTATGGCG GAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCGEST: gi|86825355|gb|CI360010.1|CI360010
genomic: TTTACCTATGGCGgtgagttctc ... tatttttcagGAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
EST: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCG GAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCGEST: gi|7332552|gb|AU085898.1|AU085898
genomic: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctc ... tatttttcagGAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
EST: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCG GAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCGEST: gi|88836740|gb|CI014741.1|CI014741
genomic: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctc ... tatttttcagGAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
EST: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCG GAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCGEST: gi|33682222|gb|CF310461.1|CF310461
genomic: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctc ... tatttttcagGAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
EST: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCG GAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCGEST: gi|86432164|gb|CI085775.1|CI085775
genomic: AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctc ... tatttttcagGAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
EST: TGAAGCTGAACTGCTATCAAAATTNACCTATGGCG GAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
genomic: TGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctc ... tatttttcagGAGTGATTTTGAGGCCTGGTTTTATTCATGGAACTCGCCGTGTCGGTAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGCAACTGAAGCTGAACTGCTATCAAAATTTACCTATGGCGgtgagttctctttcacatgtaacctttttattttcatgccaatgtgttcttgcccttcttttattgtaagaaattatttctataccttttgaaatcattt
- - - CTGAAG
- - - - TGAAGC
- - - - - AAGCTG
- - - - - AGCTGA