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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgttagttttcagaagtcacaattagcctgtttaaccagatttttcaccaaacaaagataaatgcatttgtgctctccagagtaataggttctgaaaattt...

Basic information

species Oryza sativa
transcript LOC_Os02g32570.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G057504_T01 (Zea mays), 5'ss of exon 3
AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgttagttttcagaagtcacaattagcctgtttaaccagatttttcaccaaacaaagataaatgcatttgtgctctccagagtaataggttctgaaaattt------------------------------------------------------------------
|||| || || |||||||||||  ||||||| |||||||||||||||||||| |||||||||||  |||| || ||||| || ||||| ||| || | ||||| |||  ||       | ||         || || | | |   ||   |  ||  |  ||   | | |    |  | || ||||  || | ||| |                                                                    
AATTTGTTGAGCAAGGAAGGGTTCTGCACAACTATGCTTCAATTTTGGAGTTACTTTTGCGCCTAAGGCAATGCTGTGATCATCCATTCCTTATTATGAGgtttgttgccatgcaatgctatccataacagtagcctgttatggtacttga--aatttggatttgtatcttacatgaatagcaatatcttttaaaactgaacatcgatatttatggtcttttgttgtcaattacctattgatgatggagttttttttggttgccag

upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgt-tagttttcagaagtcacaatta--gcctgtttaaccagatttttcaccaaa-caaagataaatgcatttgtgctctccagagtaataggttctgaaaattt-
| || || || |||||  | ||  | || |||||||||||||| |||||||| ||||| || |||||||| |||||||| || |||||||||||  | |||| |  | |     | || |||||   |    | ||     |||||  ||||||     | |    |||  ||  |     |  ||||| |    | |  || | 
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatg-acaacttattgtaattg----taagcatctt

upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgt-tagttttcagaagtcacaatta--gcctgtttaaccagatttttcaccaaacaaagataaat-gcatttgtgctctccagagtaataggttctgaaaattt
| || || || |||||  | ||  | || |||||||||||||| |||||||| ||||| || |||||||| |||||||| || |||||||||||  | |||| |  | |     | || |  ||   |   || ||     |||||  ||||||     |      |||  || || |     | | ||      || ||  ||
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgtaccaaaattctactgccagcacctgagcac----aaattattctaattgtaagctt

upper sequence: LOC_Os02g32570.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
AATTCGTGGAACAAGGAAGGGTCTTGCACAATTATGCTTCAATTTTGGAGTTGCTTTTGCGCCTTCGGCAGTGTTGTGACCACCCATTTCTTGTTCTTAGgttagttttcagaagtcacaattagcctgttta-accagatttttcaccaaa--caaagataaatgcatttgtgctctccagagtaataggttctgaaaattt
|||| || || |||||| ||||  | || ||||||||||| |||||||||||||||||  | ||||| || |||||||| || |||||||||||  | ||||| || |     | |     ||   |  ||       ||||  |  || |   ||  | |    |   |  |||| |  | | ||| |  |  ||    |  
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctct--tacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtgatgatgctgttgataataacaa-tgatggtggtgc