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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGgtgagatcttgtcatataacctagtctatgccgaaacacagaatcatattctttcagaccaaataataatcccgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 7
ACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGgtgagatcttg-tcatataacctagtctatgccgaaacacagaatcatattctttcagaccaa--ataataatcccgttgcag
|||| |||||||||||  | || |||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||| || || || ||||||||||||||||  |||| |||||||||| ||||  | | ||||||  |  |||   |||| |  ||||   |||| | |    ||  ||
ACACGCCGGAGCAGCTGATCGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCATGTCATTGGTCTTTGTTGTTGCGTTTAACCATTATCTCTACAGgtgaggccttgctcatataacccagtcacttcggaaaca--gggtcacgctcttccttaccagttataaaactttttttatag

upper sequence: LOC_Os02g31874.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 4
ACACCCCGGAGCAGCTAGTTGCGAAATACAGCAATTTAGTGTTTGTTCTCTATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGgtgagatcttg-------tcatataacctagtctatgccgaaacacagaatcatattctttcagaccaaataataatcccgttgcag
|||| |||||||||||  | || |||||||||||||| ||||||||||| |||||||||||| |||||||||| |||||||| || || |||||||||||||||   ||||       |||||||||| ||||| | | ||||||  |   |||  |||| |  ||||  |   | |    ||||||
ACACGCCGGAGCAGCTGATAGCAAAATACAGCAATTTGGTGTTTGTTCTTTATTGCATGTCATTGGTCTTTGTTGTTGCATTTAACCACTATCTCTACAGgtgatgccttgctcttgctcatataacccagtctcttcagaaaca--gggccatgctcttccttaccagttctaattttttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688305|gb|CK076992.1|CK076992
EST:     TATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAG                         GAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTG
genomic: TATTGCATGTCACTGGTCTTTGTGGTTGCATTCAATCAGTATCTCTACAGgtgagatctt ... cccgttgcagGAGTGGAGAAACTATCATTTCGGATAGTGCGAAACATACTGGCTCACATTG