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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCAGGCACTGGACTCATTTAATACAGCTGTGGTCTCTCCTGTGTACTACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtacttgttactttcaaatagctttaaaattgtatctgcaaatgtgattcctgtagtgtttgtctccctgagagaaaatgcgctccagattagta...

Basic information

species Oryza sativa
transcript LOC_Os02g29510.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g29510.4 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G092991_T03 (Zea mays), 5'ss of exon 7
GTTGCAGGCACTGGACTCATTTAATACAGCTGTGGTCTCTCCTGTGTACTACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtacttgtt-actttcaaatagctttaaa-attgtat-ctgcaaatgtgattcctgtagtgtttgtctccctgagagaaaatgcgctccagattagta
       || |||||||| || || || |||||||| |||||||| |||||||||||||||||||| ||||| ||| |||| |||||||| |||||||||||||| |  ||||  |||| |  |||  |||    || ||||  ||   |     ||  |   ||  ||  || |  | |   | ||  | |    || |   
-------GCTCTGGACTCGTTCAACACGGCTGTGGTTTCTCCTGTATACTACGTGATGTTCACCATTCTTACCATTGTTGCAAACATGATCATGTACAAGgtgatttcattgtccacttgcgcatatttttttccatggtatattggtcacaaattttttcccgttatttcctgctcgcggccatatagggtgacaatga---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88251212|gb|CI349640.1|CI349640
EST:     ACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAG                         GATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTT
genomic: ACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtact ... tctattccagGATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTT
EST: gi|88251269|gb|CI349697.1|CI349697
EST:     ACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAG                         GATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTT
genomic: ACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtact ... tctattccagGATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTT
EST: gi|29617921|gb|CB622933.1|CB622933
EST:     ACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAG                         GATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTT
genomic: ACGTGATGTTCACCATACTTACTATTTTTGCTAACATGATTATGTACAAGgtgatgtact ... tctattccagGATTCATTCTCACGGAATGCAACACAGATTGCAACACAGTTATGTGGTTTT