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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCTTCCTTCTGAGCATTAGAGGGCTTGGACTAAAAAGCACGGAGTGTGTTCGTCTTTTGACACTACACCAAATGGCTTTTCCAgtaaattttcattgttccttactctcatagttaaaatttcaaatgtatttcgattgaatctttgtgtgctaatttcctag

Basic information

species Oryza sativa
transcript LOC_Os02g29230.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g29230.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G422464_T02 (Zea mays), 5'ss of exon 5
GGGCTTCCTTCTGAGCATTAGAGGGCTTGGACTAAAAAGCACGGAGTGTGTTCGTCTTTTGACACTACACCAAATGGCTTTTCCAgtaaattttcattgttccttactctcatagt-taaaatttcaaatgtatttcga---ttgaatctttgtgtgctaatttcctag
|| ||||||||| |||||||||||||||||||| |||||    ||||||||||| || ||||||||||| || ||||||||||||||  ||  || ||||| || | |||||||   |    | |||| | |||| |      | || || ||| || | ||| |||||
GGACTTCCTTCTAAGCATTAGAGGGCTTGGACTCAAAAGTGTTGAGTGTGTTCGCCTCTTGACACTACATCATATGGCTTTTCCAgt--atgctctttgttgctcaatctcataaagttttttctcaagtatattccttattctaaagctctgtatgttgattccctag

upper sequence: LOC_Os02g29230.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G123587_T01 (Zea mays), 5'ss of exon 5
GGGCTTCCTTCTGAGCATTAGAGGGCTTGGACTAAAAAGCACGGAGTGTGTTCGTCTTTTGACACTACACCAAATGGCTTTTCCAgtaaattttcattgttccttactctcatagt-taaaatttcaaatgtatttcga---ttgaatctttgtgtgctaatttcctag
|| ||||||||| |||||||||||||||||||| |||||    ||||| |||||||| ||||| ||||| || ||||||||||||||  || ||| ||||  || |  ||| ||   |    |  ||| | |||| |      |||| || ||  || | ||| |||||
GGACTTCCTTCTAAGCATTAGAGGGCTTGGACTCAAAAGTGTTGAGTGCGTTCGTCTCTTGACGCTACATCATATGGCTTTTCCAgt--atgttctttgtcgctcaacctcctaaagttttttcccaagtatattccttgttctgaagctctgcatgttcattccctag