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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGATGATGGATTTCCTGAAGTTACTTTTCATTTTGAGGGAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGGgtatttaataatctctcttgcctattcttttttttttttaccatacaacttacaaacattatgttaggccgtgggcatgcatgttgaatttagtgcacag...

Basic information

species Oryza sativa
transcript LOC_Os02g27360.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g27360.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G098215_T01 (Zea mays), 5'ss of exon 3
CGTCGATGATGGATTTCCTGAAGTTACTTTTCATTTTGAGGGAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGGgtatttaataatctctcttgcctattcttttttttttttaccatacaacttacaaacattatgttaggccgtgggcatgcatgttgaattt----agtgcacag--
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TTTAGATGAAGAATTTCCTGTAATCACCTTTAGTTTTGAGGGAGACCCTACACTGAATGTTTACCCACATGATTACCTTTTCCAGAACGGGgtaa--gataacatctattctccttgctttttctaagtaa---tataagcaacaa-tagtgtgtcaaatctaccttttctatgctatgtttttcaaaagcttaatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86499644|gb|CI142277.1|CI142277
EST:     GAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGG                         AAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
genomic: GAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGGgtatttaata ... tgttgtgcagAAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
EST: gi|86493808|gb|CI136441.1|CI136441
EST:     GAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGG                         AAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
genomic: GAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGGgtatttaata ... tgttgtgcagAAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
EST: gi|88903097|gb|CI088635.1|CI088635
EST:     GAGACGTTTCACTGATTGTTTCTCCACATGATGATCTTTTCCAAAATGGG                         AAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
genomic: GAGACGTTTCACTGATTGTTTCTCCACATGATTATCTTTTCCAAAATGGGgtatttaata ... tgttgtgcagAAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
EST: gi|88246534|gb|CI246383.1|CI246383
EST:     GTTTCTCCACATGATTATCTTTTCCAAAATGGG                         AAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
genomic: GTTTCTCCACATGATTATCTTTTCCAAAATGGGgtatttaata ... tgttgtgcagAAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
EST: gi|88228038|gb|CI227518.1|CI227518
EST:     TTTCCAAAATGGG                         AAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT
genomic: TTTCCAAAATGGGgtatttaata ... tgttgtgcagAAGAATTTATACTGCATGGGGTTCCAAAACGGTGGAGTACAAACCAAGGAT