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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTAAAGATTTCTTCCCAGATTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcacaatcaatattacctgtttataactgtgaaaaaaatatatcctatttgcaatttagatgcacctttcaattctttggtttgtaattttcataactgtcctattttatttcag

Basic information

species Oryza sativa
transcript LOC_Os02g15550.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15550.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G120578_T02 (Zea mays), 5'ss of exon 6
GTTTGTAAAGATTTCTTCCCAGATTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcacaatca-----------------atattacctgtttataactgtgaa-----aaaaatatatcctatttgcaatttagatgcacctttcaattctttggtttgtaattt------tcataactgtcctatttta--tttcag
 | || || || ||||||||| |||| |||||||||||  |||||||||||||||  |||||||||||||| |||| ||| | ||||                  || |||  |||| ||| |||   |      |   |   |  | |||   || | | |   ||||||| || | ||   | |||||       | | || |||  |  ||    ||||||
ATCTGCAAGGAATTCTTCCCACATTTGTCTGTTGGATTTGAAGATCCTCGTGTTCAACTTCATGTTGGTGACGgtatgttgataatcccatgagccatgatgactatgttatttgttgatatctgccgattgctgaggtttcctgttgttttagatattggtaatcctttcagtt-tgtgagctctaattccatatgtaacaattgtttttcttccactttcag

upper sequence: LOC_Os02g15550.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G060896_T02 (Zea mays), 5'ss of exon 7
GTTTGTAAAGATTTCTTCCCAGATTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcacaat------------------caatattacctgtttataactgtgaaaaaaatatatcctatttgcaatttag-atgcacctttcaattctttggtttgtaattttc--ataactgtcct--attttatttcag
|| || ||||||||||||||| | || |||||||||||  |||||||||||||||  |||||||| || ||||||| ||  | |||                  | | ||||  |  | |||  ||    |      | |    |||  |  || | |   |  |    | |  |||   ||||||||    | || |||  |  || |  ||||||
GTGTGCAAAGATTTCTTCCCACACTTGTCTGTTGGATTTCAAGATCCTCGTGTTCAACTTCATGTCGGCGATGgtatgtagataattccatgaggctatgatgactacattattttctgatatatgctgtagcttcttgtttcttttagatattggtaaataaatactcagttcttgaactgtaatttcacaagaattgttttttatctactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218497061|gb|FG955846.1|FG955846
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATT
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATT
EST: gi|58602035|gb|CK012563.1|CK012563
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCT
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCT
EST: gi|58695758|gb|CK084445.1|CK084445
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
EST: gi|218497953|gb|FG959345.1|FG959345
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
EST: gi|58695993|gb|CK084680.1|CK084680
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
EST: gi|33793719|gb|CF322742.1|CF322742
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
EST: gi|84117386|gb|CD151153.1|CD151153
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
EST: gi|29664250|gb|CB660525.1|CB660525
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAAGAATGCTCCTGAAGGGACATATGA
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGA
EST: gi|58678117|gb|CK066804.1|CK066804
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
EST: gi|33794317|gb|CF323046.1|CF323046
EST:     TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATG                         CTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG
genomic: TTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGgtacgttcac ... tttatttcagCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTG