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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatgatgcgcttatcttttgctttcag

Basic information

species Oryza sativa
transcript LOC_Os02g11050.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G137528_T01 (Zea mays), 5'ss of exon 7
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatgatgcgcttatcttttgctttcag---
||| ||||||||||||| || |||||||| |||||||| |||||| |||||||||| |||||||||||||| ||||| ||||| |||||||| ||||| ||| || | | ||||| |   |   || |    ||| || ||   |||  | ||  || |||    | ||||| | |||     | |   
GTTTTGATGGCAACAAACAGAATAGACATTTTGGATCAAGCCCTTTTGAGGCCTGGCCGCATAGACAGGAAGATTGAGTTTCCAAATCCTAACGAGGACgtatgttcggctaactcatcctg--ttataccagttgatcttat-atggctactcctgctgacagggtgcttaacctttttcccctgcag

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G107362_T04 (Zea mays), 5'ss of exon 7
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatgatgcgctta-tcttttgctttcag--
||| |||||||||| || || |||||||| |||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| ||||||||| ||   | ||||| |   |   || |   |||| ||||| | |||  | ||  || |||    ||||||| ||||||||  |     
GTTTTGATGGCAACGAACAGAATAGACATTTTGGATCAAGCCCTTCTGAGGCCTGGCCGCATAGACAGGAAGATTGAATTTCCAAATCCTAACGAGGATgtatgtttggctaactcatcctg--ttatacctgttgattttac-atggctactgctgctgacagggcgcttaatcttttgcccttgcag

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA07G00420.1 (Glycine max), 5'ss of exon 7
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatgatgcgcttatcttttgctttcag------------------------
||| ||||||| || ||| |||| || ||| ||||||| ||||| || || || || || |||||| |||||||||||||||| || |||||||| || ||  |   |  |   ||  ||  ||    ||    || || | |   ||       ||    || |||  | ||       | |                           
GTTTTGATGGCCACCAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCAGGACGGATAGACCGGAAAATTGAATTTCCAAACCCTAATGAAGAGgtttgcatttttgctttcatgc-tacccattaatatatttgtactgggagaaaagatgcacctggtgcattcataaaaaaatattcctgaaaatgagtattttttatgcag

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA08G24000.1 (Glycine max), 5'ss of exon 7
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtt--tgtgttaatttttccatgatttcttgtgt-tgatgatgcgcttatcttttgctttcag----------------------
||| ||||||| |||||| |||| || ||| ||||||| ||||| || || ||||| || || ||| |||| ||||||||||| || |||||||| || ||  |   |  |   ||  ||    || ||  | | ||  |  |   |  |     ||    || ||     || |     |  |                           
GTTTTGATGGCCACAAATCGGATTGATATCCTGGATCAAGCCCTCCTTAGACCTGGACGGATTGACCGGAAGATTGAATTTCCAAACCCTAATGAAGAGgtttgcatttttgctttcatgctacttattaatatatttgtactgggagaaaaagatgcacctggtgcattcctaaaaaagtattcctgaaaatggctatttatttatgcag

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
lower sequence: AT5G19990.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaa-------gtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatg-atgcgcttatcttttgctttcag-------------------------------------------------------------------------------------------------------
||| ||||||| |||||| | || || ||  ||||||| || ||||| ||||||||  | || || ||||||||||||||||||||||||||||| || ||||       |  |||| ||  |  | |  | ||||  | ||  |  |   |  |  |  |  ||  | | | || | | | ||| |  || ||                                                                                                       
GTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCAGGCCTGGAAGAATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatacttgtgctctgagaaaatgatattgactgttgtttttggtgatatgaatacattattcgtcaaagtaggcacct-tatttagtatttagactatcatttgcagcataaaaaacttttctttatctccatactcattttactcaagtgaggcaggacggtttggctaatgtatgtttccaaaatgtgttgcag

upper sequence: LOC_Os02g11050.1 (Oryza sativa), 5'ss of exon 7
lower sequence: AT5G20000.1 (Arabidopsis thaliana), 5'ss of exon 7
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg-ataacttactgtatattgtttgtgttaattttt--ccatgatttcttgtgttgatgatgcgcttatcttttg----ctttcag------------------------------------------------------------------------------------------
||| ||||||| |||||| | || || ||  ||||||| || |||||  |||||||  | || || ||||||||||||||||||||||||||||| || ||||    ||  |  ||||    ||  | || |   ||| |||   |    | |       ||| | |  |  || | ||| |    || |||                                                                                           
GTTTTGATGGCTACAAATCGTATTGATATTCTGGATCAAGCTCTTCTCCGGCCTGGAAGGATTGATAGGAAAATTGAATTTCCTAATCCTAATGAAGAGgtaatgcttgtgtttcttaggacatgatattagaaataactttaaacttgaagtagcaactttgctcactccgttgtttttggtaaactatcatttactgcgtaaaatacttttctccatacttattgtacccaaagtgaggcaggacggtttggctaatgtatatttctaatatgtgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86503321|gb|CI145954.1|CI145954
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATTCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88273241|gb|CI388697.1|CI388697
EST:     AGGAAAATT-AATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGGAGATTCATTCAAGAAAAATG-ACTTGATGCGT
genomic: AGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|38476303|gb|CF960436.1|CF960436
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88834339|gb|CI077622.1|CI077622
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|8527682|gb|AU092497.1|AU092497
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|44671590|gb|CR285024.1|CR285024
EST:     GGCCTGTTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58686846|gb|CK075533.1|CK075533
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58678887|gb|CK067574.1|CK067574
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86431237|gb|CI083660.1|CI083660
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29626059|gb|CB631070.1|CB631070
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58673687|gb|CK062373.1|CK062373
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAG
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAG
EST: gi|86425780|gb|CI070877.1|CI070877
EST:     GACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|163918429|gb|EG711419.1|EG711419
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTC
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTC
EST: gi|89195125|gb|CI051238.1|CI051238
EST:     GACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58681623|gb|CK070310.1|CK070310
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86868048|gb|CI331835.1|CI331835
EST:     TCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACCCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: TCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86433938|gb|CI094281.1|CI094281
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|163925712|gb|EG714548.1|EG714548
EST:     AATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTC
genomic: AATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTC
EST: gi|5667189|gb|AU077449.1|AU077449
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29688287|gb|CB684562.1|CB684562
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29678518|gb|CB674793.1|CB674793
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|163921150|gb|EG714112.1|EG714112
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29616715|gb|CB621727.1|CB621727
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|38480816|gb|CF964905.1|CF964905
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88256799|gb|CI354580.1|CI354580
EST:     GGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29673581|gb|CB669856.1|CB669856
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|89179924|gb|CI044203.1|CI044203
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88834343|gb|CI077626.1|CI077626
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86427664|gb|CI072761.1|CI072761
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86413364|gb|CI067769.1|CI067769
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58678290|gb|CK066977.1|CK066977
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58685431|gb|CK074118.1|CK074118
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|94362450|gb|CI052445.1|CI052445
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|27576305|gb|CA998999.1|CA998999
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88956169|gb|CI092457.1|CI092457
EST:     GGCCTGGTCGTATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58597197|gb|CK007725.1|CK007725
EST:     GAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58587248|gb|CF985556.1|CF985556
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58660687|gb|CK049367.1|CK049367
EST:     TTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: TTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|218502167|gb|FG956639.1|FG956639
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|16753367|gb|BM037746.1|BM037746
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88264979|gb|CI368753.1|CI368753
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86414245|gb|CI068648.1|CI068648
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTGTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|58694561|gb|CK083248.1|CK083248
EST:     CGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: CGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86425654|gb|CI070751.1|CI070751
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29659206|gb|CB655481.1|CB655481
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|86491933|gb|CI134566.1|CI134566
EST:     CCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: CCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29658747|gb|CB655022.1|CB655022
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|29687574|gb|CB683849.1|CB683849
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
EST: gi|88955526|gb|CI091618.1|CI091618
EST:     GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGAT                         TCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT
genomic: GGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 74 (downstream exon)
Score: 76

GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctg ... ttgctttcagTCACGCTTTGATATCTTGAAGATTCATTCAAGAAAAATGAACTTGATGCGTGGTATTGATCTGAAAAAGATCGCTGAAAAGATGAATGGGGCTTCAGGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTGATGGCAACAAATAGGATAGACATCTTGGATCAGGCCCTTCTGAGGCCTGGTCGCATAGACAGGAAAATTGAATTTCCTAATCCTAATGAGGATgtaagtgctgataacttactgtatattgtttgtgttaatttttccatgatttcttgtgttgatgatgcgcttatcttttgctttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT