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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGGAATATTGAATGTCAAGGTGAAAGGAGGCACCAACCTAGCCATCAGAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtctctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g10480.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g10480.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G138349_T04 (Zea mays), 5'ss of exon 3
CATCGGAATATTGAATGTCAAGGTGAAAGGAGGCACCAACCTAGCCATCAGAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattatgaaatcctaattttctgatggtttctgggcaactaattcaagatcgaattcatcgttttgtaccacattgtc-tctcattcagaacatgcagaaattcttgttctaaatttcaccatatcttcgctgtgtgcag
||| ||||||||||||||||||||||  ||||||||||||||||||||||| || |||||||||||||| |||||||| |||||||| ||||||||||||||| | ||              || || | |  ||    |||| || | || ||  | ||  |  |     |  |||  | | |||  || |   ||                                               
CATTGGAATATTGAATGTCAAGGTGATTGGAGGCACCAACCTAGCCATCAGGGATATGTCAAGCAGTGACCCTTATGTCGTCCTGACACTTGGGCAACAGgtaattttg---------gtcgttttgttagaatc---acaacaaaataaacatatactttgttat--caaattacagcgccctcttgttgattgcag----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87005483|gb|CI285705.1|CI285705
EST:     GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAG                         AAAGCGCAAACCTCGGTG
genomic: GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTG
EST: gi|29645547|gb|CB650554.1|CB650554
EST:     GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAG                         AAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
genomic: GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
EST: gi|9866250|gb|AU102000.1|AU102000
EST:     GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAG                         AAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
genomic: GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
EST: gi|13806102|gb|AU181353.1|AU181353
EST:     TCCTGACCCTTGGGCAACAAG                         AAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGA
genomic: TCCTGACCCTTGGGCAAC-AGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGA
EST: gi|29657516|gb|CB653791.1|CB653791
EST:     GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAG                         AAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
genomic: GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
EST: gi|86507268|gb|CI149901.1|CI149901
EST:     GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAG                         AAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
genomic: GAGACATGTCAAGCAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
EST: gi|86502666|gb|CI145299.1|CI145299
EST:     CAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAG                         TAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA
genomic: CAGTGATCCTTATGTAGTCCTGACCCTTGGGCAACAGgtagtattat ... ctgtgtgcagAAAGCGCAAACCTCGGTGATCAAAGCCAACCTGAACCCTGTCTGGAACGAA