1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATGTAAGGTTCTGGTTAAACTCGGAAGAGGCAAGGAGGCTATAAGTAGCTGTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgtgacattacttgcttggcatgcacagaaatacacatttttctaatttagagtggaaaccaaagttcttattattcaatgttgaaacttccgtgaaaaaa...
species | Oryza sativa |
transcript | LOC_Os02g10180.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|29624026|gb|CB629037.1|CB629037
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgtgacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: GATGCATTAACACAG AGAGGTGAAGCTAAGTTTTTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|29685030|gb|CB681305.1|CB681305
genomic: GATGCATTAACACAGgtgacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: TGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|29624027|gb|CB629038.1|CB629038
genomic: TGATGCATTAACACAGgtgacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|29664003|gb|CB660278.1|CB660278
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgtgacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATEST: gi|58676081|gb|CK064768.1|CK064768
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgtgacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
EST: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAG AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
genomic: GTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgtgacattac ... ctggttgcagAGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGTAAGGTTCTGGTTAAACTCGGAAGAGGCAAGGAGGCTATAAGTAGCTGTACAGAAGCACTCAACATAGATGGAGAACTTGTTGATGCATTAACACAGgtgacattacttgcttggcatgcacagaaatacacatttttctaatttagagtggaaaccaaagttcttattattcaatgttgaaacttccgtgaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA