1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TAGATCTATTGGTGCTATTTTCAACAACATCTATGCATTCTGTGGGTTGATTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttatagtagtgcacattgataacgatgcatatattatgttggctgtttttggaagacataattcataccaaaattttcttatggaaacttgtcta...
species | Oryza sativa |
transcript | LOC_Os02g08120.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|218486885|gb|FG955631.1|FG955631
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|51946147|gb|CV152488.1|CV152488
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|58689965|gb|CK078652.1|CK078652
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|218478168|gb|FG952613.1|FG952613
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|86825505|gb|CI361700.1|CI361700
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|86870151|gb|CI318065.1|CI318065
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAACCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTTGATGTATGCCEST: gi|569278|gb|D40127.1|D40127
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TCTNGCGGAGCAGTTCTATTTCATCTGAAAGTCTTTATGATAGCCCAAAG CTCTTTGCTGATGCAEST: gi|117244367|gb|CT849708.1|CT849708
genomic: TCTGGCG-AGCAGTTCTATT-CATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCA
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCCEST: gi|29669563|gb|CB665838.1|CB665838
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
EST: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAG CTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
genomic: TTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttata ... ttcattacagCTCTTTGCTGATGCATTGGTTAAGAAGGCATATGATAATTGGATGTATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGATCTATTGGTGCTATTTTCAACAACATCTATGCATTCTGTGGGTTGATTTCTGGCGAGCAGTTCTATTCATCTGAAAGTCTTGATGATAGCCAAAAGgttggttatagtagtgcacattgataacgatgcatatattatgttggctgtttttggaagacataattcataccaaaattttcttatggaaacttgtcta
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