Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATTgtaagtctacaagtattttcttatatagttttttccctatcatttttacttattttcatgccttgttattttacag

Basic information

species Oryza sativa
transcript LOC_Os02g07960.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G020986_T01 (Zea mays), 5'ss of exon 7
TGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATTgtaagtctac-aagtattttcttatatagttttttccctatcatttttacttattttcatgccttgttattttacag-------
||||||||| ||||| |||||||||||| |||||||||||||  |||||||| || ||||| |||||||||||||| |||||  |   ||| ||| |||  ||     | || | | |  |     |||||||   |  ||||  ||         
TGATATTTCTTCCAACAACTTCAGTGGTCCATTACCACCTTCATTGGGAAGCTTGACATCACTGACTACATTgtaattctactgaccgtttccttttatttttaccctcttaccttgtacatactctttcatgatcttctattgcactttgcacag

upper sequence: LOC_Os02g07960.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G335638_T01 (Zea mays), 5'ss of exon 7
TGATATTTCATCCAATAACTTCAGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATTgtaagtctacaagtattttcttatatagttttttccctatcatttt-tacttatttt--catgccttgttattttacag
 |||||||| ||||| |||||||||||| |||||||||||||  |||||||| || ||||| |||||||||||||| ||||||| | ||| ||| |||   |||| |||| | |  || |||||| | |  || |   |  ||||  ||||
GGATATTTCTTCCAACAACTTCAGTGGTCCATTACCACCTTCATTGGGAAGCTTGACATCACTGACTACATTgtaattctacaactgttt-cttctat---ttttaccctcttaccttgtacttactcttccaggatgttctattgcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626064|gb|CB631075.1|CB631075
EST:     AGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATT                         GCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCT
genomic: AGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATTgtaagtctac ... tattttacagGCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCT
EST: gi|29621905|gb|CB626916.1|CB626916
EST:     AGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATT                         GCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCT
genomic: AGTGGTTCATTACCACCTTCTCTGGGAAGCCTGTCATCATTGACTACATTgtaagtctac ... tattttacagGCACATGCAAGACAACCAACTATCCGGAACCCTTGATGTCTTGCAGGATCT