Sequence
atgc intronic sequence ATGC exonic sequenceAACAAAGATGGTACCGTTTCTACATATGAATGTAAAAGAACTTCTACTTGGATAGAGgtgagtttctgcacactatcgccccgatatgctttataaacatacatcagaaaagaactcaatgattgtgcctacgtcataactcatagcacaatcaaac...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g04750.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g04750.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G468929_T01 (Zea mays), 5'ss of exon 12
AACAAAGATGGTACCGTTTCTACATATGAATGTAAAAGAACTTCTACTTGGATAGAGgtgagtttctgcacactatcgccccgatatgctttataaacatacatcagaaa-agaactcaatgatt---gtgcctacgtcataactcatagca-caatcaaac--------------------------------------------------------
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AATCCAGACGGTACCTTTTCAACATATGAATGCAAAAGAACTTCTTCATGGATAGAGgtaagtatctacagaccatt---ctgatatgttttattttgtcccgttagtagtatggtcttgtgctttatattctgtaatcttaactcttcgtttcaatagaatcccactattttacagtttcattgcattgacatacaatttttctattaattacctag
upper sequence: LOC_Os02g04750.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006937_T01 (Zea mays), 5'ss of exon 12
AACAAAGATGGTACCGTTTCTACATATGAATGTAAAAGAACTTCTACTTGGATAGAGgtgagtttctgcacactatcgccccgatatg-ctttataaacatacatcagaaaag----aactcaatgattgtgcct----acgtcataac--tcatagcacaatcaaac---------------------------
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AACAAAGATGGCACCTTTTCTACATATGAGTGCAAAAGAACTTATTCTTGGTTAGAGgtaagtttctgtcggctggagctcttatatatccttgttacttcccattaggaaggtgcaatcttaaactttttatttcaatacatcttaatatttctagctccactgtattgacacgtctttttgttaattaactagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|38481879|gb|CF965948.1|CF965948EST: ATGGTACCGTTTCTACATATGAATGTAAAAGAACTTCTACTTGGATAGAG A-TCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCC
genomic: ATGGTACCGTTTCTACATATGAATGTAAAAGAACTTCTACTTGGATAGAGgtgagtttct ... tataacctagATTCTCAATCCTTGTGAGAGTTTTTCAAACATGGTGGTCGATTATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AACAAAGATGGTACCGTTTCTACATATGAATGTAAAAGAACTTCTACTTGGATAGAGgtgagtttctgcacactatcgccccgatatgctttataaacatacatcagaaaagaactcaatgattgtgcctacgtcataactcatagcacaatcaaac
- - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAAC