Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCAAAGAGCAATTGCTAAGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAgtaagattggacctgccatattttatcttcctcgccaaatcatgtcttgtttctgtattgcctattgttacttgttactctattttcttattatcttacctttagaattctatgatttaacttcatttactgttccataaag

Basic information

species Oryza sativa
transcript LOC_Os02g04660.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g04660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G169927_T03 (Zea mays), 5'ss of exon 12
TATCAAAGAGCAATTGCTAAGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAgtaagattggacctgccatattttatcttcctcgccaaatcatgtcttgtttctgtattgcctattgttacttgttactctattttcttattatcttacctttagaattctatgatttaacttcatttactgttccataaag
|||| ||||||| |||||||||| ||||||||||| ||| | |||||||  ||||| ||||| |  || ||| |||| | |||   | | ||||   |      | |   |  | |  |   || |   | |||| ||   |   ||| ||   |      |    |  | ||| |                                   
TATCGAAGAGCAGTTGCTAAGGCCTTGGTTGATAGGGTTGCTGATGATGCAGTCTCCACAACTAGGACGgtaggattaggcct--taaactttaatgtgtctttccacctaaatttgatgcatgcaaaccttatt-ttctgtaaaactttagaatagcgaaa----aaatctagga-----------------------------------

upper sequence: LOC_Os02g04660.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G011456_T01 (Zea mays), 5'ss of exon 12
TATCAAAGAGCAATTGCTAAGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAgtaagat-tggacctgccatattttatcttcctcgccaaatcatgtcttgttt-ctgtattgcctattgttacttgttact-ctattttcttattatcttacctttagaattctatgatttaacttcatttactgttccataaag
|||| ||||||| |||||||||| ||||||||||| ||| | |||||||  ||||| ||||| |  || ||||    | || ||   || | |  | ||||||   || |     | |||   |  || | ||  |    | ||   ||  | |     |||  |  | |                                            
TATCGAAGAGCAGTTGCTAAGGCCTTGGTTGATAGGGTTGCAGATGATGCAGTCTCCACAACTAGGACGgtaaagccttgaactttgatgtgt--ttttcctcctaaatttggtgcatgtaaaccatacttccagtaaaaatttaggacagcgaaaagtttaggagatgat-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682054|gb|CK070741.1|CK070741
EST:     AGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACA                         GTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTA
genomic: AGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAgtaagattgg ... ttccataaagGTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTA
EST: gi|218484593|gb|FG954368.1|FG954368
EST:     AGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACA                         GTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTA
genomic: AGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAgtaagattgg ... ttccataaagGTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTA
EST: gi|58659401|gb|CK048081.1|CK048081
EST:     AGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACA                         GTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTA
genomic: AGGCATTGGTTGATAGAGTTTCCGATGATGATGTCTCAACAACAAAAACAgtaagattgg ... ttccataaagGTGCTGATGGTTGTTGGAGCAGGCCGGGGGCCACTAGTGAGAGCGTCGTTA