1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGCCGGGAGCCTTCAAGACTGCCAGTTTCAAAATTTGAGTTTGAATTTGAGCGAAGGAAACTGACAAAGGATGATGTAAGAGAAATGATATATCGAGAGgtacaaagctaccgctccattttatgttatgggctggctgataaatccatctcactcaaaattacttttttattttctgaaagtaaacag
species | Oryza sativa |
transcript | LOC_Os02g04230.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCGAAGGAAACTGACAAAGGATGATGTAAGAGAAATGATATATCGAGAG ATATTAGAGTACCATCCCCAAATGCTTCAGGAGTACATCAGAGGTGGAGAAEST: gi|29629373|gb|CB634384.1|CB634384
genomic: AGCGAAGGAAACTGACAAAGGATGATGTAAGAGAAATGATATATCGAGAGgtacaaagct ... aagtaaacagATATTAGAGTACCATCCCCAAATGCTTCAGGAGTACATCAGAGGTGGAGAA
EST: ATGATGTAAGAGAAATGATATATCGAGAG ATATTAGAGTACCATCCCCAAATGCTTCAGGAGTACATCAGAGGTGGAGAA
genomic: ATGATGTAAGAGAAATGATATATCGAGAGgtacaaagct ... aagtaaacagATATTAGAGTACCATCCCCAAATGCTTCAGGAGTACATCAGAGGTGGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCGGGAGCCTTCAAGACTGCCAGTTTCAAAATTTGAGTTTGAATTTGAGCGAAGGAAACTGACAAAGGATGATGTAAGAGAAATGATATATCGAGAGgtacaaagctaccgctccattttatgttatgggctggctgataaatccatctcactcaaaattacttttttattttctgaaagtaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA