1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGACCGGAGGCTACTATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaactgttcaacaaaactcacttttttttacatgcattaaataccttctccaatttgtgtgtgcatactcctttaaaatcaaatttaatgcatat...
species | Oryza sativa |
transcript | LOC_Os02g03890.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAG GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAGEST: gi|88908284|gb|CI090877.1|CI090877
genomic: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaact ... caattttcagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAG
EST: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAG GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAGEST: gi|58680181|gb|CK068868.1|CK068868
genomic: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaact ... caattttcagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAG
EST: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAG GCTTCACCAATTGAAATAAATGGGCEST: gi|163920587|gb|EG709594.1|EG709594
genomic: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaact ... caattttcagGCTTCACCAATTGAAATAAATGGGC
EST: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAG GCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAG
genomic: ATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaact ... caattttcagGCTTCACCAATTGAAATAAATGGGCGGCAGATATATGTTGAGGAGCGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGACCGGAGGCTACTATGCGTTCGTGGAATTCGAAGAACTTAGTGGTGTTCACAATGCATTGAAGgtggcaaactgttcaacaaaactcacttttttttacatgcattaaataccttctccaatttgtgtgtgcatactcctttaaaatcaaatttaatgcatat
- - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG