1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
ATGGAAGAGCGAATGACACTGTGCAACATGGTTATTGAAGCTGGTGGCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaatggcctttaaaatgcttggtaataaaatgagcgatatttttatgcaaataaaacaacccaacatccttaagcttcgaataagaagaaatatttacaagaacaaatttctaacttttacataatgataattatgactccatatcggtcatcctggtaactgcag
species | Oryza sativa |
transcript | LOC_Os02g03260.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|88340371|gb|CI659577.1|CI659577
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|218494441|gb|FG968569.1|FG968569
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|88336267|gb|CI648854.1|CI648854
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|88307301|gb|CI641939.1|CI641939
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|2312204|gb|C28359.1|C28359
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|88329810|gb|CI651478.1|CI651478
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|88571723|gb|CI663096.1|CI663096
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|88326072|gb|CI651125.1|CI651125
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|29616438|gb|CB621450.1|CB621450
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|218490400|gb|FG966882.1|FG966882
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAGEST: gi|29628818|gb|CB633829.1|CB633829
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
EST: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAG GGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
genomic: GCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaat ... gtaactgcagGGCAAGACATCAGTTGAATACGAGCCTGTCTATAGTGATGCTCAGGCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAAGAGCGAATGACACTGTGCAACATGGTTATTGAAGCTGGTGGCAAGAATGGTGTTGTGCCTGCCGATCAAACTACATTTAACTATCTTGAGgtactttaatggcctttaaaatgcttggtaataaaatgagcgatatttttatgcaaataaaacaacccaacatccttaagcttcgaataagaagaaatatttacaagaacaaatttctaacttttacataatgataattatgactccatatcggtcatcctggtaactgcag
- - - - - - - - - - - - - - - - - - - - - - - GCAAGA