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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAGgtactattttattcccatttttatcaacttttaactaatcaaatctattctgagcctgtaaatctttgtggttttattctgacaatttactgtgcatgtatatcagccagtcacattcaagccatgtggttatagcaatactaatagctcatctttcctttcacag

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.4 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G466281_T02 (Zea mays), 5'ss of exon 8
CTTTTTCACAAACACACTAATTCTTCCTATAGTCAACGGACCGACTGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAGgtactattttattcccatttttatcaactttta-actaatcaaatctattctgagcctgtaaatctttgtggttttattctgacaatttactgtgcatgtat--atcagccagtcac------attcaagccatgtggttatagcaatactaatagctcatctttcctttcacag
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CTTTTTTACAAATACACTTATTCTTCCTATAGTCAACGGACCAACTGAAGGCCTTATGCTGATCTACTTGTGCCATTTTTTCACCTTTTTCACAGgtacaatttgttttgaatt---gtcaatttatatgtttataaggttcctgttgaacttcaaa----taaaggtgttcctctgctaattcactgtgcatatatgtatgaggcctttactcaaaagtcaaaaccatgtggtt--tgtggtatttatagctcatctttccttt-gtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2431249|gb|C73669.1|C73669
EST:     TGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG                         GAGCTGAATGGTGGGCACAAGATTTCCGGAAGTCAATACCCCTACTAAACT
genomic: TGAAGGCCTTATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAGgtactatttt ... cctttcacagGAGCTGAATGGTGGGCACAAGATTTCCGGAAGTCAATACCCCTACTAAACT
EST: gi|33803550|gb|CF327650.1|CF327650
EST:     ATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAG                         GAGCTGAATGGTGGGCACAAGATTTCCGGAAGTCAATACCCCTACTAAACT
genomic: ATGCTAATCTATTTGTGCCATTTTTTCACCTTCTTCACAGgtactatttt ... cctttcacagGAGCTGAATGGTGGGCACAAGATTTCCGGAAGTCAATACCCCTACTAAACT