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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGCACTGCTCCTTTTAGCGAACCTGAGGCTCAGATCATGCGAGAGCTATCCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacaggctattgtgttttgttgttttccatattcatcatgtaatagagaccattgttcgtagtgcatcttagccacaataagatagcactttgatc...

Basic information

species Oryza sativa
transcript LOC_Os02g02710.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G006069_T02 (Zea mays), 5'ss of exon 6
TGGCACTGCTCCTTTTAGCGAACCTGAGGCTCAGATCATGCGAGAGCTATCCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacaggc-tattgtgttttgttgttttcc-atattcatcatgtaatagagaccattgt-----tcgtagtgcatcttagccacaataagatagcactttgatc
||| | |||||||||||||||||||||||| ||||||||| | ||  |||| | ||| |||||||| ||||| |||||||| |||||||| ||||||||||||| |||| | | || | || |||| |  |||  ||         |||||   | | | ||     |  |  |||| || |||| ||| | |||   |        
TGGTATTGCTCCTTTTAGCGAACCTGAGGCCCAGATCATGAGGGAATTATCAAGGTCGTTTAAACCTCATATTTGGGTGAACGTGCATTCTGGAATGGAGgtaatacagccctcttatattctgttatcatcctgtacgtgatgcataataacaagcctggtcattgttatgatgcaactaagccgcaaaaggatgataa-------

upper sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA06G02070.1 (Glycine max), 5'ss of exon 6
TGGCACTGCTCCTTTTAGCGAACCTGAGGCTCAGATCATGCGAGAGCTATCCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacaggctattgtgttttgttgttttccatattcatcatg--taatagagaccattg--ttcgtagtgcatcttagccacaataagatagcactttgatc
||| | |||||| || || || |||||   ||| || |||||  | ||  |||  || ||| |||||||| | ||||| ||||||||||| ||||||||||||||    | |  | | ||    |||||   | ||  |  |||  | || |   || | |  |||||| | ||  || |   |  |||   || | ||  |  
TGGAATTGCTCCATTCAGTGAGCCTGAAAGTCAAATTATGCGGAAACTTGCCATATCTTTTGAACCACATCTATGGGTCAATGTGCATTCTGGAATGGAGgtaagtttagttcat-ttttcacctgtttctaaaataaaaaatgattgattgttcccttggatttcgta-tccacatttgt-gctttaattcaggatttgcac-

upper sequence: LOC_Os02g02710.3 (Oryza sativa), 5'ss of exon 7
lower sequence: Vv18s0122g01410.t01 (Vitis vinifera), 5'ss of exon 7
TGGCACTGCTCCTTTTAGCGAACCTGAGGCTCAGATCATGCGAGAGCTATCCAAGTCATTTAAACCACATATGTGGGTGAATGTGCATTCCGGAATGGAGgtaagacaggctattgtgttttgttgttttccatattcat-catgtaatagagaccattgttcgtagtgcatcttagccacaataagatagcactttgatc
||| |||||||||||||| || |||||| |||| || |||||  | || ||||  |||||| | |||||||| ||||| |||||||| || |||||||||||||  || |||| | |   |  | || | |||| ||  |   || | |   ||   |||    ||  |     ||     |      |      |     
TGGAACTGCTCCTTTTAGTGAGCCTGAGACTCAAATAATGCGGAAACTCTCCATATCATTTGATCCACATATATGGGTTAATGTGCACTCTGGAATGGAGgtaaatcatgctaattttcctgttagtgtcccatgttgctgtttgcagtgttgatttttgactttaaggtcctatattattagccctgttcagtctctgc-