1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTGGACTGTATGGTTATTGCTACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaactaacttggaacaatcgatacagtccatattccataatttcgattacaaatgcagtactcaagatttggcttctgtttcttatcag
species | Oryza sativa |
transcript | LOC_Os02g01100.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TATTCTTCTCTGAAGGATCGCAACCAGTTTCCTTCTATTCTTTTCACTTG TATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAEST: gi|29678444|gb|CB674719.1|CB674719
genomic: TATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaact ... ttcttatcagTATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAA
EST: TATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTG TATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAEST: gi|87006659|gb|CI295042.1|CI295042
genomic: TATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaact ... ttcttatcagTATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAA
EST: TATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTG TATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAEST: gi|86498766|gb|CI141399.1|CI141399
genomic: TATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaact ... ttcttatcagTATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAA
EST: TCTATTCTTTTCACTGG TATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAAEST: gi|29663318|gb|CB659593.1|CB659593
genomic: TCTATTCTTTTCACTTGgtaattaact ... ttcttatcagTATTGGGTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATAA
EST: CAACCAGTTTCCTTCTATTCTTTTCAC-TG TATGGGGNTTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATA
genomic: CAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaact ... ttcttatcagTATTGGG-TTGTCCTCAATTTTGTTTGCCGGTGCTGCTGTGATGGGATATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGACTGTATGGTTATTGCTACTCAGGACATGGTGTGTTCCCGAACATCTATTCTTCTCTGAAGAATCGCAACCAGTTTCCTTCTATTCTTTTCACTTGgtaattaactaacttggaacaatcgatacagtccatattccataatttcgattacaaatgcagtactcaagatttggcttctgtttcttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA