1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagttttatgtggacctatctcttttttcccctaccctcctaggcaaatgttagggataagtgtgctcatatatcagcatatcttcttttttgtcgtt...
species | Oryza sativa |
transcript | LOC_Os01g74580.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGGAGCGGTTCAGGATCTAAAAGAGGCTGCCCAGAAATCTCCCCAG GACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTAEST: gi|29616880|gb|CB621892.1|CB621892
genomic: GGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTA
EST: GGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAG GACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTAEST: gi|86496076|gb|CI138709.1|CI138709
genomic: GGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTA
EST: GGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAG GACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTAEST: gi|8527566|gb|AU092381.1|AU092381
genomic: GGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTA
EST: CAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCCAG GACATGGGAATCCGAGAANCACTAATGAGAGCTGAAAAGCNGCTTAAGTTEST: gi|58681128|gb|CK069815.1|CK069815
genomic: CAGGATCTAAAAGAAGCTTCCCAGAAATCT-CCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTT
EST: GGGAAGGAGCGGTTCAGGATCTAAAAGAGGCTGCCCAGAAATCTCCCCAG GACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTAEST: gi|87021666|gb|CI276065.1|CI276065
genomic: GGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTA
EST: GGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCCAGAAATCTCCCCAG GACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTAEST: gi|5004271|gb|AU069420.1|AU069420
genomic: GGAAGGAGCGGTTCAGGATCTAAAAGAAGCTT-CCCAGAAATCTCCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGCTGAAAAGCAGCTTAAGTTA
EST: AGGATTCTAAAAGAAGCTTCCCAGAAATCTCCCCAG GACATGGGAATCCGAGAAGCACTAATGAGAGCTTGAAAAGCAGCTTAAGTT
genomic: AGGA-TCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagtttta ... tcatgctcagGACATGGGAATCCGAGAAGCACTAATGAGAGC-TGAAAAGCAGCTTAAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGGTGAAGCTAAGCTTCTTACAGAAGACTGGGAAGGAGCGGTTCAGGATCTAAAAGAAGCTTCCCAGAAATCTCCCCAGgcaagttttatgtggacctatctcttttttcccctaccctcctaggcaaatgttagggataagtgtgctcatatatcagcatatcttcttttttgtcgtt
- - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC