1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGCCAGTTATCCCAGGATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAGgtttggtccctactcaacaagtgcgctttcttcagaatgaatgaacagattctaaagtggtaaggttttatccag
species | Oryza sativa |
transcript | LOC_Os01g74350.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAG GGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTACEST: gi|29621784|gb|CB626795.1|CB626795
genomic: GATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAGgtttggtccc ... ttttatccagGGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTAC
EST: GATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCTATGATCGATCAG GGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTACEST: gi|88486325|gb|CI423596.1|CI423596
genomic: GATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAGgtttggtccc ... ttttatccagGGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTAC
EST: GGCCATCGGTGTCATGCCAATGATCGATCA- GGAGAGGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTAEST: gi|88485439|gb|CI422710.1|CI422710
genomic: GGCCATCGGTGTCATGCCAATGATCGATCAGgtttggtccc ... ttttatccagGGAGA-GGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTA
EST: GATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAG GGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTAC
genomic: GATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAGgtttggtccc ... ttttatccagGGAGAGGCAGATGATAAGATTATTGCAGTCTGTGCTGATGATCCTGAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCCAGTTATCCCAGGATGCTTCCTACGGGCAAAGGCCATCGGTGTCATGCCAATGATCGATCAGgtttggtccctactcaacaagtgcgctttcttcagaatgaatgaacagattctaaagtggtaaggttttatccag
- - - - - - - - - - - - - - - GCAAAG