1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGCCGGAGGGTGCCCGTCGCTTGCGGACCAGCTGAACGTGGACGCCTTCCTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccggtcagccaaacaaacatcttcttactccagctgctgctttaacttgctgctactgcttggtgagattaatttggtgtttgtcatatgcatatgtgtgtgtggtgcag
species | Oryza sativa |
transcript | LOC_Os01g73910.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTG GAACGCTCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGATGCGAGCCCGEST: gi|58687641|gb|CK076328.1|CK076328
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccgg ... tgtggtgcagGAACGCTCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGATGCGAGCCCG
EST: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTG GTACATCCGGAACGCTCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGATEST: gi|58690986|gb|CK079673.1|CK079673
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccgg ... tgtggtgcagG-A-A-C-G---C--TCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGAT
EST: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGGTACATCCGEST: gi|88205420|gb|CI205269.1|CI205269
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGT---C-GG--C-T--Ggtacatccgg ... tg
EST: CTGGAGCAAGCTCGCTCCTACGGCAAAGCTGCGTCAAACCCCGTCGGCTGGTACATCCGEST: gi|29689228|gb|CB685503.1|CB685503
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGT---C-GG--C-T--Ggtacatccgg ... tg
EST: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTG GTACATCCGGAACGCTCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGATEST: gi|29624826|gb|CB629837.1|CB629837
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccgg ... tgtggtgcagG-A-A-C-G---C--TCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGAT
EST: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTG GTACATCCGGAACGCTCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGATEST: gi|86601574|gb|CI253902.1|CI253902
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccgg ... tgtggtgcagG-A-A-C-G---C--TCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGAT
EST: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTG GTACATCCGGAACGCTCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGAT
genomic: CTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccgg ... tgtggtgcagG-A-A-C-G---C--TCAGACGAGAGAGCTGTCGCATCCTCTGCCGGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCGGAGGGTGCCCGTCGCTTGCGGACCAGCTGAACGTGGACGCCTTCCTGGAGCAAGCTCGCTCCTACGACAAAGCTGCGTCAAACCCCGTCGGCTGgtacatccggtcagccaaacaaacatcttcttactccagctgctgctttaacttgctgctactgcttggtgagattaatttggtgtttgtcatatgcatatgtgtgtgtggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC