1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACTAGTTATCAAGCACAATGCTAACCAACGTTATGCTACTAGTGCTGTGACAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaatattttacattttaaccctcaataccatctttttttattgcaaattcccattatgtttgaacaaataagtgtgcttcaagatggataagaat...
species | Oryza sativa |
transcript | LOC_Os01g73680.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAG GAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATAEST: gi|29662827|gb|CB659102.1|CB659102
genomic: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaata ... tagcttatagGAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
EST: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAG GAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATAEST: gi|86256003|gb|CI068452.1|CI068452
genomic: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaata ... tagcttatagGAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
EST: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAG GAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATAEST: gi|88987857|gb|CI017946.1|CI017946
genomic: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaata ... tagcttatagGAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
EST: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAG GAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATAEST: gi|88903192|gb|CI088730.1|CI088730
genomic: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaata ... tagcttatagGAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
EST: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAG GAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATAEST: gi|88833602|gb|CI077083.1|CI077083
genomic: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaata ... tagcttatagGAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
EST: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAG GAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
genomic: CAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaata ... tagcttatagGAATTTGTTGTAAGGAATGATATGGGCTGTGGTTCAACTATTGGCCCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTAGTTATCAAGCACAATGCTAACCAACGTTATGCTACTAGTGCTGTGACAGCTTTTCTGTTCAAAGAAATAGCAAGACTTCATAATCTTCCTGTTCAGgtattcaatattttacattttaaccctcaataccatctttttttattgcaaattcccattatgtttgaacaaataagtgtgcttcaagatggataagaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA