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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGgtatggtatggtatgattccatattatatatttccgactaaaactgtggttttgcatatccaacttttggtcaaccatacatccgaacaaaagaaagaac...

Basic information

species Oryza sativa
transcript LOC_Os01g72870.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72870.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G133959_T01 (Zea mays), 5'ss of exon 5
GATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGgtatggtatggtatgattccatattatatatttccgactaaaactgtggttttgcatatccaacttttg-gtcaaccatacatccgaacaaaagaaagaac--
|||   |||| ||| ||||||||||||||| ||||||||||||| ||||||||   || ||  ||| | |   | |  | | |||   ||   | | |   |  || | |    || |||   || |  |   | |   |||        |   
GATTGCGAGCATGGGCGATTGTTTTCGTTGTATGAACAAATTGACCACAAGgtgcagtttg-catgctccatcagttgaaacttct--ctgctattttttgtccgcttttgtttctgttgcaacagcttttggttcctgcaacttctgtcatga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27576528|gb|CA999222.1|CA999222
EST:     ATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAG                         GTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTG
genomic: ATGCAGAGCGTGGACGATTGTTTTCGTTGCATGAACAAATTGATCACAAGgtatggtatg ... atgcatgcagGTCGATTTCATTGAGCAAGAATTTCAACATTCGGAACAATCATTAGTTCTG