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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctacttcaatagaactacgtagtgaggcagtgttacttcctttgtagtttctgaacactgtttatatgtgttatcttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g70920.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86414242|gb|CI068645.1|CI068645
EST:     AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG                         GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACNATCTGTGT
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: gi|300216040|gb|HO088666.1|HO088666
EST:     AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG                         GTCCAGGAAACTGTGCAGAAGGAAACGAAGAGACTGATTCACTATCTGTGT
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: gi|29656964|gb|CB653239.1|CB653239
EST:     AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG                         GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: gi|25806675|gb|CA762636.1|CA762636
EST:     AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG                         GTCCAGGAAACTGTGCAGAAGGAAACGAAGAGACTGATTCACTATCTGTGT
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: gi|88842698|gb|CI081954.1|CI081954
EST:     CAATACCCTTTGCAAGATNACCTTGCTAAG                         GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACNATCTGTGT
genomic: CAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
EST: gi|58678984|gb|CK067671.1|CK067671
EST:     AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAG                         GTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT
genomic: AAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctact ... tatcttgtagGTCCAGGAAACTGTGCAGAAGGAAATGAAGAGACTGATTCACTATCTGTGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAAGCTGAAAAGTGCTGTTATTCAAGATACATACTTGTACTACTCCAGGAAAAGTTATGAATGGATTGTGCAATACCCTTTGCAAGATTACCTTGCTAAGgtaacctacttcaatagaactacgtagtgaggcagtgttacttcctttgtagtttctgaacactgtttatatgtgttatcttgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA