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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTATCCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttcaactctttgcaccttgtatgtttcagctttttttcttgtgctgacaaaacctacaacaactgttatatgtttcag

Basic information

species Oryza sativa
transcript LOC_Os01g70130.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87040533|gb|CI195155.1|CI195155
EST:     CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAG                         GAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
genomic: CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttca ... tatgtttcagGAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
EST: gi|86593020|gb|CI270577.1|CI270577
EST:     ATGTGAAGTTGAAGTATGAGAAGCATTAAAG                         GAAACTGAGGTCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
genomic: ATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttca ... tatgtttcagGAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
EST: gi|88198304|gb|CI198154.1|CI198154
EST:     TAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAG                         GAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
genomic: TAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttca ... tatgtttcagGAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
EST: gi|33795120|gb|CF323433.1|CF323433
EST:     CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAG                         GAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
genomic: CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttca ... tatgtttcagGAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
EST: gi|86500110|gb|CI142743.1|CI142743
EST:     CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAG                         GAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
genomic: CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttca ... tatgtttcagGAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
EST: gi|29615708|gb|CB620720.1|CB620720
EST:     CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAG                         GAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC
genomic: CCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttca ... tatgtttcagGAAACTGAGGGCTAATGGTTCAGTAGAACGTCAGACCACAGCAAGAAAGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTTCAGGACAGAACCATATGCCTGTGAACCATCAAGCCTTCCCCGGTATCCACCATGTAAAGAAATAGATGTGAAGTTGAAGTATGAGAAGCATAAAAGgtcctgttcaactctttgcaccttgtatgtttcagctttttttcttgtgctgacaaaacctacaacaactgttatatgtttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC