1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattcttgattctattgctaagtgcctcttttaccccacacccctttttaaattcatttttttttgttttgttcatttcagtattgccaacttttg...
species | Oryza sativa |
transcript | LOC_Os01g69990.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTG GCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCEST: gi|58653795|gb|CK042475.1|CK042475
genomic: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattct ... ccataagcagGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
EST: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTG GCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCEST: gi|25799945|gb|CA755906.1|CA755906
genomic: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattct ... ccataagcagGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
EST: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTG GCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCEST: gi|58658298|gb|CK046978.1|CK046978
genomic: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattct ... ccataagcagGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
EST: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTG GCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCEST: gi|33663406|gb|CF294373.1|CF294373
genomic: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattct ... ccataagcagGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
EST: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTG GCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCCEST: gi|218503451|gb|FG944711.1|FG944711
genomic: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattct ... ccataagcagGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
EST: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTG GCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
genomic: AGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattct ... ccataagcagGCCTGAAGCTACCATGCCAAAAGGGGGCACTCATTCCTTGCTGAAGCGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGACTTGCCAATGAGGTACCAAGAGGAAAAAGGCAGGGTTCAAGCGCGAGCTTGGTAGGGGATGACACTAACTTTGCTGAAGAAGCTGGTAGCAACTGgtattattcttgattctattgctaagtgcctcttttaccccacacccctttttaaattcatttttttttgttttgttcatttcagtattgccaacttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccct