1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TATAAAGACTGTTCTGCCAGGATTGAAGTCACGTATAAGTTCTCAATTGACAACTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAGgtggggtttgaattaaaaaagaaattttgtccaagtgttagaagcataaaatttgtttgaaatgtttttcaacaatattacctgactttttttatttagggcttaatgaaatcaggccaattcatctgtgttctcagctaattttttgtcctctttgttgatggtccatctgtgtttctttactgcag
species | Oryza sativa |
transcript | LOC_Os01g69130.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ACTACGTGGTAAGGAGCTTTCCGTTTTATGGTGATCCAGTCGAGTCCAAGG GCTGGTCAAGGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGEST: gi|58679026|gb|CK067713.1|CK067713
genomic: ACTAC-TGCTAAGGAGCTTTCC-TTTTATGGTGATCCAGTCGAGTCCAA-Ggtggggtttg ... tttactgcagGCTGGTCAA-GGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG
EST: CTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAG GCTGGTCAAGGTGCTAAGCTTGTGAACATTCTGGCAAAGTACTGTGAAGEST: gi|58658952|gb|CK047632.1|CK047632
genomic: CTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAGgtggggtttg ... tttactgcagGCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG
EST: CTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAG GCTGGTCGAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAGEST: gi|29655723|gb|CB651998.1|CB651998
genomic: CTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAGgtggggtttg ... tttactgcagGCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG
EST: CAACTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCTAGTCCAAG GCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG
genomic: CAACTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAGgtggggtttg ... tttactgcagGCTGGTCAAGGTGCTAAGCTTTTGAACATTCTGGCAAAGTACTGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAAAGACTGTTCTGCCAGGATTGAAGTCACGTATAAGTTCTCAATTGACAACTACTGCTAAGGAGCTTTCCTTTTATGGTGATCCAGTCGAGTCCAAGgtggggtttgaattaaaaaagaaattttgtccaagtgttagaagcataaaatttgtttgaaatgtttttcaacaatattacctgactttttttatttagggcttaatgaaatcaggccaattcatctgtgttctcagctaattttttgtcctctttgttgatggtccatctgtgtttctttactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT