1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTGCTGTTGGCATTCAAGGTACTCTCTCAAAACTGTCGCAACTTGTTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctttgtactgagtactgtcaatttctgatgtgtttagtgtggtcctctgacagatttgctttatgtagtgttcaaactacattgcatctattt...
species | Oryza sativa |
transcript | LOC_Os01g68010.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAAGTATGATGGAGAGCTTCAGCGTCATTTGGAAATAACAAC---AG-AA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|88981591|gb|CI027202.1|CI027202
genomic: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAAC---AG-AA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|84117083|gb|CD150850.1|CD150850
genomic: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: GAAGTATGATGGAGAGCTTCAGCGTCATTTGGAAATAACAACAGAAGTAA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|88903574|gb|CI089112.1|CI089112
genomic: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAAC---AG-AA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAGEST: gi|86422689|gb|CI060262.1|CI060262
genomic: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
EST: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAAC---AG-AA ATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
genomic: GAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctt ... gtttctgcagATTAATCCTCAGTTCTACGCATTCCGGTGGATTACGCTACTGTTAACCCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTGCTGTTGGCATTCAAGGTACTCTCTCAAAACTGTCGCAACTTGTTGCGAAGTATGATGGAGAGCTTCAGCGTTATTTGGAAATAACAACAGAAGTAAgtatgttctttgtactgagtactgtcaatttctgatgtgtttagtgtggtcctctgacagatttgctttatgtagtgttcaaactacattgcatctattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT