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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTATCTCAGTTTTATCTTCTCTGACGGTTGTTGCTCCAGATTACTTGGACTCTCTTGCGAATCTTGGTGTTGCCTACATTCAAAGgtttgaacggtaaatatcatttcgacttccgttttcttccttctgattgttaacacttgtgaatatccag

Basic information

species Oryza sativa
transcript LOC_Os01g67920.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67920.2 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G025451_T01 (Zea mays), 5'ss of exon 7
AGTGCTATCTCAGTTTTATCTTCTCTGACGGTTGTTGCTCCAGATTACTTGGACTCTCTTGCGAATCTTGGTGTTGCCTACATTCAAAGgtttgaacggtaaatatcatttcgactt-ccgttttcttccttctgattgttaacacttgtgaatatccag-------
||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| |||      |||  ||||  | ||  | || ||||||||| || | |||| | || | ||    ||        
AGTGCTATCTCAGTTCTATCTTCTCTCACGGCTGTTGCTCCAGACTACTTGGACTCCCTTGCAAATCTTGGCGTTGCATACATTCAAAGgttcgaa------atactattttcagttgtcattgtcttccttcagact-ttaatatttatcaactatcaactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58688532|gb|CK077219.1|CK077219
EST:     CCAGATTACTTGGACTCTCTTGCGAATCTTGGTGTTGCCTACATTCAAAG                         TGGGAATCTAGAACTGGCCACAAAATGCTTTCAAGAACTTGTTATAAAAGA
genomic: CCAGATTACTTGGACTCTCTTGCGAATCTTGGTGTTGCCTACATTCAAAGgtttgaacgg ... gaatatccagTGGGAATCTAGAACTGGCCACAAAATGCTTTCAAGAACTTGTTATAAAAGA