1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TAATGGAGTTCATTGAAGGGACACCAATAATGAATCTTGGCAATGAAATGGCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagccccttcatctcgaaagagtatggccctcatttgcttggtttatgaaaccttacattagttttgctttctggagtatctttttgatgttttaacg...
species | Oryza sativa |
transcript | LOC_Os01g67720.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCA-CAATGGCAAAGCA GAAAATTTTTACAGATCTTACACTTGCCTATGGTCAAATGATTTEST: gi|29671475|gb|CB667750.1|CB667750
genomic: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTT
EST: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGAEST: gi|29620799|gb|CB625810.1|CB625810
genomic: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
EST: AGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGAEST: gi|29618995|gb|CB624007.1|CB624007
genomic: AGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
EST: AAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGAEST: gi|29617999|gb|CB623011.1|CB623011
genomic: AAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
EST: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGAEST: gi|29674918|gb|CB671193.1|CB671193
genomic: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
EST: TGGTAAGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGAEST: gi|58678170|gb|CK066857.1|CK066857
genomic: TGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
EST: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGAEST: gi|29627126|gb|CB632137.1|CB632137
genomic: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
EST: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCA GAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
genomic: GCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagcccct ... cttaatgcagGAAAATTTTAACAGATCTTACACTTGCCTATGGTCAAATGATTTTGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATGGAGTTCATTGAAGGGACACCAATAATGAATCTTGGCAATGAAATGGCTAAAAGGGGCATTGATCCTGGTGGTAAGATTGCAACAATGGCAAAGCAgtaagccccttcatctcgaaagagtatggccctcatttgcttggtttatgaaaccttacattagttttgctttctggagtatctttttgatgttttaacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG