1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattcattctttcaagttattgtttcagtgctttcttgaactctggaagattttataacatatgttggttccattccttttaccag
species | Oryza sativa |
transcript | LOC_Os01g66350.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88333187|gb|CI641030.1|CI641030
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88332186|gb|CI643603.1|CI643603
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88330936|gb|CI638344.1|CI638344
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88326154|gb|CI657734.1|CI657734
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|58679991|gb|CK068678.1|CK068678
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88328813|gb|CI646884.1|CI646884
genomic: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88330845|gb|CI636857.1|CI636857
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|88305833|gb|CI633413.1|CI633413
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: ATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|29662114|gb|CB658389.1|CB658389
genomic: ATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCGEST: gi|29685831|gb|CB682106.1|CB682106
genomic: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
EST: CTTCATTTGCCTTCCTTTCATGAGGTTATCTTTGGAGTTCATATCATGAT GTGAGATCGGTCGCGCTAAATACTTTAAACEST: gi|29681946|gb|CB678221.1|CB678221
genomic: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAAC
EST: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAG GTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
genomic: CTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattc ... cttttaccagGTGAGATCGGTCGTGCTAAATACTTTAAACAGAGCAAGGTTTACTGTTGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCACTGGCTTGAGCATCTTCATTTCAAAACGGAATCCATCATTGGTGACTTCATTTGCCTTCCTTTCATGTGGTTATCTTTGGAGTTCATATCATGAGgttcgcattcattctttcaagttattgtttcagtgctttcttgaactctggaagattttataacatatgttggttccattccttttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG