Sequence
atgc intronic sequence ATGC exonic sequenceGTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCTGCATCTATTTGTTCTCCCTGGGATCTGGTGgttagttgctggacattattcactgaaatacagatacatataattcatgattgtattatctgattttttttttaccaatttttaactcagttcttatgcc...
Basic information
species | Oryza sativa |
transcript | LOC_Os01g65070.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g65070.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G005444_T01 (Zea mays), 5'ss of exon 7
GTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCTGCATCTATTTGTTCTCCCTGGGATCTGGTGgttagttgctgga-cattattcactg---aaatacagatacatataattcatgattgtattatctgattttttttttaccaatttttaactcagttcttatgcc
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GTCAAGTATCTTGGAGAAGAAGGCGAGAATACTCCTATAGCGGGTGCAGTATCTATTTGTTCTCCATGGGATCTGTTGgttagttgctcgatcgatactcaccaggaaaacttgaatgcttatgatgtaggatc-ttttattaagttgtgtcttaa--gaacttcagttca-cttttgcatt
upper sequence: LOC_Os01g65070.1 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA20G31690.1 (Glycine max), 5'ss of exon 6
GTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCTGCATCTATTTGTTCTCCCTGGGATCTGGTGgttagttgctggacattat--tcact-gaaatacagatacatataattcatgattg-tattatctgattttttttttaccaatttttaactcagttcttatgcc
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ATAAAATATCTTGGTGAGGATGGTGAGAATATTCCTGTAGCTGGAGCTGTAGCTGTTTGCTCTCCTTGGGACCTTTTGgttagtattttgatttcaaaatcataagaaatctagttagttaaacttttaaattaacatgattatatggcatatcttacaagataaaa-tcaataataaa---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|88381842|gb|CI682518.1|CI682518EST: ATACTCCTGTGGCTGGTGCTGCATCTATTTGTTCTCCCTGGGATCTGGTG GTGGGCGACCGATTTATTTCCCGCAAGCTTGTGCAGCGGTTTTACGACAAA
genomic: ATACTCCTGTGGCTGGTGCTGCATCTATTTGTTCTCCCTGGGATCTGGTGgttagttgct ... tgttttgtagGTGGGCGACCGATTTATTTCCCGCAAGCTTGTGCAGCGGTTTTACGACAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCAAATATCTTGGAGAAGAAGGTGAGAATACTCCTGTGGCTGGTGCTGCATCTATTTGTTCTCCCTGGGATCTGGTGgttagttgctggacattattcactgaaatacagatacatataattcatgattgtattatctgattttttttttaccaatttttaactcagttcttatgcc
- - - - - - - - - - - - - - - - - - - - - - TGCTGC