1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTGACCTTACAGATCGTAATTCAAGGGTTGAGAAAGCAAAGGTTGGACCATTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGTgtgagtatgcctggttactctctagaggaaccattttcactattgaaaaaaaaaatgaccccacggtgaccattttcactattaagttgctatctacaaa...
species | Oryza sativa |
transcript | LOC_Os01g64870.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGT GTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACGEST: gi|29640468|gb|CB645477.1|CB645477
genomic: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGTgtgagtatgc ... ttgttgacagGTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACG
EST: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGT GTCAAATGAGTGGACCCTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACGEST: gi|58695955|gb|CK084642.1|CK084642
genomic: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGTgtgagtatgc ... ttgttgacagGTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACG
EST: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGT GTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACGEST: gi|2427824|gb|C72287.1|C72287
genomic: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGTgtgagtatgc ... ttgttgacagGTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACG
EST: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGT GTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACGEST: gi|58653515|gb|CK042195.1|CK042195
genomic: TTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGTgtgagtatgc ... ttgttgacagGTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACG
EST: TTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATGCGGGTTCAGT GTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACG
genomic: TTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCAT-CTGGTTCAGTgtgagtatgc ... ttgttgacagGTCAAATGAGTGGACATTGGAGTTTGTTGATTTTGGTGGAGAGATGAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGACCTTACAGATCGTAATTCAAGGGTTGAGAAAGCAAAGGTTGGACCATTTGGATCCAGATTGTTCGACTCTGCCGTATCTGTTTCATCTGGTTCAGTgtgagtatgcctggttactctctagaggaaccattttcactattgaaaaaaaaaatgaccccacggtgaccattttcactattaagttgctatctacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacg