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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctacttatgttttcagaatagtgtacttcctgaagaacctgagctaaaatctacaacaatcatttacag

Basic information

species Oryza sativa
transcript LOC_Os01g64660.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA16G28310.1 (Glycine max), 5'ss of exon 9
ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctactt--atgttttcagaatagtgt-acttcctgaagaacctgagctaaaatctacaacaatcatttacag--------
|| ||||||||||| || |||||||||||||||||||| ||||| ||||| |||||    ||||| || | ||| |    | ||   || | | | |||  | | |    ||   | |  |  |  ||  |    |   ||  || ||          
ATCCCAAAGAAAGGTAAAATTTATTCAGTGAATGAAGGAAATGCCAAAAACTGGGATCGTCCTACTGCTACgtatgtttgaattcagtgatcttataatgttttcaggcactagtgcatatttgtcaatcttgtaattcatttttcacttcttctcag

upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 7
lower sequence: EFJ18090 (Selaginella moellendorffii), 5'ss of exon 8
ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctacttatgttttcagaatagtgtacttcctgaagaacctgagctaaaatctacaacaatcatttacag
||||||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| ||   |  ||| |       | |  |||   || |||  |  |  |||   |    ||                          
ATACCAAAGAAGGGAAAAATTTATTCCGTGAATGAGGGCAATGCAAAGAACTGGGACGAGCCCACTAGATTgtaagtttagtgttttctttttaaaaagta-agattttgatttatgacag--------------------------

upper sequence: LOC_Os01g64660.3 (Oryza sativa), 5'ss of exon 7
lower sequence: EFJ36627 (Selaginella moellendorffii), 5'ss of exon 7
ATACCAAAGAAAGGGAAGATTTATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgctacttatgttttcagaatagtgtacttcctgaagaacctgagctaaaatctacaacaatcatttacag
||||||||||| || || |||||||| |||||||| || ||||| || || ||||||||||| ||   |  ||| |       | |  |||   || |||  |  |  ||  |||       |   || ||  |||           
ATACCAAAGAAGGGAAAAATTTATTCCGTGAATGAGGGCAATGCAAAGAACTGGGACGAGCCCACTAGATTgtaagtttggtattttcttttcaaaaagta-agattttggtgaatta----tttgatttatgacag----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38470545|gb|CF954676.1|CF954676
EST:     AGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: AGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|29686739|gb|CB683014.1|CB683014
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|29621610|gb|CB626621.1|CB626621
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|38473796|gb|CF957928.1|CF957928
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|58588683|gb|CF986991.1|CF986991
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         G-TTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|58590217|gb|CF988525.1|CF988525
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|29613014|gb|CB618027.1|CB618027
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|29617760|gb|CB622772.1|CB622772
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|33820806|gb|CF336207.1|CF336207
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|4714676|gb|AU055793.1|AU055793
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTNCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|27546650|gb|CA764792.2|CA764792
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|89198621|gb|CI016706.1|CI016706
EST:     ACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: ACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
EST: gi|29682614|gb|CB678889.1|CB678889
EST:     TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAA                         GTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT
genomic: TATTCAGTGAATGAAGGGAATGCGAAAAATTGGGACGAGCCTACCGCAAAgtacgcgcta ... tcatttacagGTTTGTGGAGAAGTGCAAGTTCCCTAAGGATGGTTCATCACCTAAATCCTT