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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaagaacctctctgcacatgccctaactatgccccatcatcatcgctgcatgcatgtttttgttccggtacaccgcctcgtccatccatccac...

Basic information

species Oryza sativa
transcript LOC_Os01g63770.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g63770.2 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G127949_T03 (Zea mays), 5'ss of exon 4
CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaagaacctctctgcacatgccctaactatgccccatcatcatcgctgcatgcatgtttttgttccggtacaccgcctcgtccatccatc-cac-
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||| ||||||||||||| ||||| |||||||||||||||  |  |   |  |   |||          | |      || |  | ||| |      |   |         || |   | |  | ||  || || |   
CATCAACTCCGCCGTCGGCGCGCTGCTCGTCAGCTTCACCGTCTACATCATCCCGGCCCTGGCGCACGTCCTCACCTACCGCACGGCGTCCGCGCGCATGgta--cgtatacatatgcatgcgtgcatttgcattgcattgcacccccgtcgtttagcaaacaataacaacggcgtcctgtggcctggccggccgtcgcgtt

upper sequence: LOC_Os01g63770.2 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ21839 (Selaginella moellendorffii), 5'ss of exon 7
CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaagaacctctctgcacatgccctaactatgccccatcatcatcgctgcatgcatgtttttgttccggtacaccgcctcgtccatccatccac
 ||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||  | ||||| |||||  |||| ||  | || |||| |||  |   |||||  |          |||     | |   || |    ||  || || |  |    ||  ||     | |  | |       || |    |   || | 
AATCAACTCCGCGGTCGGGGCGCTCCTCGTCACCTTCACTGTCTATATCATCCCCTCGCTCGCACACATGATCACGTATAGAACAGCCTTCGCCAGGGCGgtaagtttctcgcaaaatctcgtttttctggaagttcttccactcctcgtttccttttgagtgccggagatgagattatttttcttgcttgtttctctag

upper sequence: LOC_Os01g63770.2 (Oryza sativa), 5'ss of exon 3
lower sequence: EFJ34222 (Selaginella moellendorffii), 5'ss of exon 7
CATCAACTCCGCCGTCGGCGCGCTCCTCGTCAGCTTCACCGTCTACATCATCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaagaacctctctgcacatgccctaactatgccccatcatcatcgctgcatgcatgtttttgttccggtacaccgcctcgtccatccatccac-
 ||||||||||| ||||| ||||||||||||| |||||| ||||| ||||||||  | ||||| |||||  |||| ||  | || |||| |||  |   |||||  |          ||| |   |  |   |   |   |||              ||  ||     | |  | |       || |    |   ||    
AATCAACTCCGCGGTCGGGGCGCTCCTCGTCACCTTCACTGTCTATATCATCCCCTCGCTCGCACACATGATCACGTATAGAACAGCCTTCGCCAGGGCGgtaagtttctcgcaaaatct-cgtttttctggaagttcttccactgctcgtttcctttgagtgccaaagatgagattttttttcttgcttgtttctctgag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87039922|gb|CI194544.1|CI194544
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|29646076|gb|CB651083.1|CB651083
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|86494568|gb|CI137201.1|CI137201
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87042096|gb|CI194720.1|CI194720
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87039973|gb|CI194595.1|CI194595
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87041578|gb|CI196200.1|CI196200
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|86502680|gb|CI145313.1|CI145313
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|86479174|gb|CI121807.1|CI121807
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|86858545|gb|CI273104.1|CI273104
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87040985|gb|CI195607.1|CI195607
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|86484225|gb|CI126858.1|CI126858
EST:     CATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: CATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87038740|gb|CI192779.1|CI192779
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|88198140|gb|CI197990.1|CI197990
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|88198342|gb|CI198192.1|CI198192
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|88197295|gb|CI197145.1|CI197145
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87039397|gb|CI194019.1|CI194019
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAGGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|88198128|gb|CI197978.1|CI197978
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|88198063|gb|CI197913.1|CI197913
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87039545|gb|CI194167.1|CI194167
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87036225|gb|CI190847.1|CI190847
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAGGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87040152|gb|CI193361.1|CI193361
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
EST: gi|87038911|gb|CI193533.1|CI193533
EST:     TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATG                         AACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC
genomic: TCCCGGCACTCGCCCACATCCTCACCTACCGTACGGCCTCCGCGCGCATGgtaacctcaa ... tttgcaacagAACGCGGCGGAGAAGCCACCGTTCTTCCTGCCGAGCTGGACGGGGATGTTC