1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAAGTGATGTTTTTGTGTATACGTATGATGGAAATATGGCTAAAGCAGTACAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttctaggaatgttgtaattattatacctcaattgtaagagctgaattttttaactgattgtag
species | Oryza sativa |
transcript | LOC_Os01g63230.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAG GCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATGEST: gi|29617915|gb|CB622927.1|CB622927
genomic: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttct ... ctgattgtagGCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
EST: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAG GCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATGEST: gi|29621954|gb|CB626965.1|CB626965
genomic: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttct ... ctgattgtagGCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
EST: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAG GCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATGEST: gi|86478780|gb|CI121413.1|CI121413
genomic: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttct ... ctgattgtagGCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
EST: CATCAACCCAGACAG GCAGAAGCTTGTGNGACTCATTGACAAGCTTGATGAAGGTACACTAACATGEST: gi|29617917|gb|CB622929.1|CB622929
genomic: CATCAACCCAGACAGgtacagttct ... ctgattgtagGCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
EST: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAG GCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATGEST: gi|29617886|gb|CB622898.1|CB622898
genomic: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttct ... ctgattgtagGCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
EST: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAG GCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
genomic: CAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttct ... ctgattgtagGCAGAAGCTTGTGGGACTCATTGACAAGCTTGATGAAGGTACACTAACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTGATGTTTTTGTGTATACGTATGATGGAAATATGGCTAAAGCAGTACAGGGTCACAGAAGATTTGAAGGATTCCAAAAAACCATCAACCCAGACAGgtacagttctaggaatgttgtaattattatacctcaattgtaagagctgaattttttaactgattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG